Protein Info for GFF3026 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: putative membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 359 transmembrane" amino acids 7 to 25 (19 residues), see Phobius details amino acids 29 to 47 (19 residues), see Phobius details amino acids 59 to 84 (26 residues), see Phobius details amino acids 159 to 177 (19 residues), see Phobius details amino acids 207 to 235 (29 residues), see Phobius details amino acids 241 to 269 (29 residues), see Phobius details amino acids 273 to 291 (19 residues), see Phobius details amino acids 312 to 341 (30 residues), see Phobius details PF01594: AI-2E_transport" amino acids 14 to 344 (331 residues), 125.8 bits, see alignment E=1.1e-40

Best Hits

KEGG orthology group: None (inferred from 75% identity to bbr:BB0439)

Predicted SEED Role

"putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (359 amino acids)

>GFF3026 putative membrane protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
MPPVPNASLIIRGLLLLIVAAGVYFFRGFLVPVLAALIIGFASWPLYRRGVRACGGRTAL
AASLALVIVIGVLVVPLTLALHYALKEAGGLVAWLLDVNRYGAPPPQWIEALPWVGETLA
TYWREHLGEPHALGDWIQILSGQHIGNIYRMVLSATGDAVNLALTVLFMLITLFFVYKDG
ARIADQLDTIGERILPLQWQRFSRVVPATVSATVTGLGLIAIGEGVVLGVAYWVAGVPSP
VLLGVATGFMALIPGGAPLSFSLVSLYLVGSGHLWAGVGLFAWGSIELFIVDKTLRPRLV
GGPVKLPFLPTFFGLVGGVKTMGLVGLFVGPVLMALLVAIWREWLHGMSAQPPREPPPP