Protein Info for PS417_15445 in Pseudomonas simiae WCS417

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 264 signal peptide" amino acids 1 to 6 (6 residues), see Phobius details transmembrane" amino acids 7 to 30 (24 residues), see Phobius details amino acids 63 to 87 (25 residues), see Phobius details amino acids 99 to 122 (24 residues), see Phobius details amino acids 129 to 147 (19 residues), see Phobius details amino acids 184 to 207 (24 residues), see Phobius details amino acids 233 to 255 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 77 to 259 (183 residues), 44.4 bits, see alignment E=7.9e-16

Best Hits

KEGG orthology group: K02053, putative spermidine/putrescine transport system permease protein (inferred from 98% identity to pfs:PFLU3575)

Predicted SEED Role

"ABC transporter permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See U1UXX3 at UniProt or InterPro

Protein Sequence (264 amino acids)

>PS417_15445 ABC transporter permease (Pseudomonas simiae WCS417)
MKRSSLFVLQLLFTLLVCAFMLVPVLMSLLAGLTRNFFVGLSSGLTFDWLIQVWQAYSPT
VWLSLQLALACAVGVCVIGVPAAYALVRMNNRFSRAFEELMVLPVAMPGLASALALLLTY
GQFGSFRSSWLFILVGHVLFTLPFLVRPVMAVMQRQQLPLLEEAAASLGAGPIKRFFSVV
VPNCRAGILAGVLMVVTLSLGEFNLTWMLHTPMTKTLPVGLADSYASARLEIASAYTLIF
LLMIVPLLIALQAISARLSRGERR