Protein Info for GFF3016 in Variovorax sp. SCN45

Annotation: T6SS component TssG (ImpH/VasB)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 337 PF06996: T6SS_TssG" amino acids 9 to 308 (300 residues), 254.5 bits, see alignment E=7.2e-80 TIGR03347: type VI secretion protein, VC_A0111 family" amino acids 9 to 308 (300 residues), 246 bits, see alignment E=2.4e-77

Best Hits

KEGG orthology group: K11895, type VI secretion system protein ImpH (inferred from 55% identity to reu:Reut_A1728)

Predicted SEED Role

"Uncharacterized protein ImpH/VasB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (337 amino acids)

>GFF3016 T6SS component TssG (ImpH/VasB) (Variovorax sp. SCN45)
VIEELSARPQDFNLFQAISLLERAAPDAVPVGRSQGPREREAVRLHAFVSLAFEASDVRE
VDTDAPTGEPFSLTTPALSLGGSGGPLPMPVTEMLLERRQRRDHATADFLDIFNHRFLAF
LYRSRRKHHVALNPHSPSSSTLASTLDAASALGLRSGVRAPDGSALWLRHAGLLGGAPRG
MTALLALLRDRLGVQVQGTQFRGRWLALEPDASARLDMRTPLGGGAVLGKRVWDQGAGIR
LTFSDLSQQRLRDLLPRGADHALAKWLVRRFIPQDLKVEMELQLAPAERRSSLLGAANPM
RLGWTSWVAGPSFRGTLPPVQHTLTSDAGDAGGAPGA