Protein Info for GFF3016 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: FIG143263: Glycosyl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 252 transmembrane" amino acids 226 to 247 (22 residues), see Phobius details PF13641: Glyco_tranf_2_3" amino acids 9 to 98 (90 residues), 27.5 bits, see alignment E=2.8e-10 PF00535: Glycos_transf_2" amino acids 10 to 138 (129 residues), 68.8 bits, see alignment E=5.7e-23

Best Hits

KEGG orthology group: None (inferred from 78% identity to dar:Daro_4193)

Predicted SEED Role

"FIG143263: Glycosyl transferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (252 amino acids)

>GFF3016 FIG143263: Glycosyl transferase (Hydrogenophaga sp. GW460-11-11-14-LB1)
MPAPSSTHLVLIPSYNPGRKVLATVRAARAQWTPVWVVVDGSTDGSADWLTEEAARDPGL
RVLVLPENRGKGSAVLHGITVAAQQGFTHALTMDSDGQHPETLIPDFMAASQAAPDTMVL
GKPVFGPEAPALRVNGRKVSNAWANLETLGMGIGDSLYGFRVYPIAPLVRVMHGTRFMRR
FDFDPEAVVRLCWAGVRPVNVDAPVRYFSPEEGGVSHFKYLRDNVLLTWMHTRLFIGFVL
RLPLLIWRRILH