Protein Info for PS417_15395 in Pseudomonas simiae WCS417

Annotation: ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 214 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 94% identity to pfs:PFLU3562)

Predicted SEED Role

"Chromosome segregation ATPases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TY55 at UniProt or InterPro

Protein Sequence (214 amino acids)

>PS417_15395 ATPase (Pseudomonas simiae WCS417)
MRTFIQLALMTLMLGTVAFNNAAVADDLRTRHLLPVNGSVESLQHAQSVGVLLSDNTRDN
LSYLERYHDMALNGARDALDGRIRQAFVNSSDPELAIDWLMSSLQGTFLSVTVYDNLDAL
VQAHPDVVVMLDTHNQLLTQRNDQVEARFIARFYDANLQYIAKAEGSVHKQVPSVWVRDK
AAPEIAAQIEQQRDVQLDALKQFDASLKALVRAG