Protein Info for GFF3004 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: FIG027190: Putative transmembrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 187 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF19574: LolA_3" amino acids 18 to 177 (160 residues), 83.8 bits, see alignment E=5.3e-28

Best Hits

KEGG orthology group: None (inferred from 58% identity to dar:Daro_4176)

Predicted SEED Role

"FIG027190: Putative transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (187 amino acids)

>GFF3004 FIG027190: Putative transmembrane protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
MIRRLLTGLVLLGVTALAHAALDLDQLMAELARNPGGQAKFVEKRHLALLDKPVIATGEM
RYSPPDRLEKRTLTPQVETMVLDKDTLSLERDRRRMTIRLSARPEVAAFVDSIRSTLAGD
RAALERNYKLSLSGSLEAWVLVLVPSDERITSLLKSITVKGVRQQVLGIDYLQADGDRTE
MTIEPTP