Protein Info for PS417_15265 in Pseudomonas simiae WCS417

Annotation: type VI secretion protein VasK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1111 transmembrane" amino acids 16 to 38 (23 residues), see Phobius details amino acids 51 to 70 (20 residues), see Phobius details amino acids 410 to 429 (20 residues), see Phobius details TIGR03348: type VI secretion protein IcmF" amino acids 19 to 1109 (1091 residues), 905.9 bits, see alignment E=2.3e-276 PF14331: IcmF-related_N" amino acids 191 to 416 (226 residues), 181.8 bits, see alignment E=3.3e-57 PF06761: IcmF-related" amino acids 463 to 741 (279 residues), 196.9 bits, see alignment E=1.1e-61 PF21070: IcmF_helical" amino acids 880 to 976 (97 residues), 27.9 bits, see alignment E=4.5e-10 PF06744: IcmF_C" amino acids 986 to 1091 (106 residues), 83.6 bits, see alignment E=2.2e-27

Best Hits

Predicted SEED Role

"IcmF-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UAJ3 at UniProt or InterPro

Protein Sequence (1111 amino acids)

>PS417_15265 type VI secretion protein VasK (Pseudomonas simiae WCS417)
MNAFFKGVGTVLRKSWVYSLLLVLSCALLVWFFGPLLAVDDYRFWQSPTSRLLTISGLLL
LWGLAMVGMGARRTARLNQPEEHERHQRRALINEEIRQVRARFKEALQALKTSRRYGERS
ERWRDELPWYLLIGEQGSGKTSLLAASGLPSPFDHPDAAPLGAASWCDWYFAEDAVLVEA
AGRYLGQPDPSVDAAGWSTLLDLLKWRRRSRPLNGVVVTLSADTLSSSNEHDLERHARHV
RTRLQDIQQTLHVDVPVYLVLTQSDRLAGFAEFFDAQQGDGTEQVLGGDLGTDLAQVRDV
FENLLQRLGGDLIPRLHQERNVERRGHMLDFPRQVARIGDALCLFIEAAFSVNRNQPINA
LRGFYLTCAKTVDVRPHFVQGLFKRVIFAEADQAGLLTPERQRIHRRHGWMALAATVVIG
TVGAVWAHSYSFNHQRLLQLTGLIHTQTGTPPGADESHALLTLLDSRLAATQVFSPQAQA
RWIDRAGLYQGALSIAPLAAAYEHTLQQRFLPYVATVLEGRVRGSLGDREQLLDNLRAYL
MLNLRERRDNAWLAEYVSGQWSGDSSANKRLNEHFARLLEQPFLAPLDEALVARARLVLR
GESLAEVVYRALREQARNVEPYPLAEGPAFSRVEPPIPGFYTRKYLQLFEQQGTQMVHAI
AQDNWVLGEGGDLGAADLRRLMLVLEQRYFSEYADVWSDALGRIRLRESGSLQQGAEYLA
SLTSAQSALVQLLQQVRENTRLVSVSDRLETAVQPVAGLGAVTSRSLARAGLPDNARRAL
QRRFEPLHQLLDEQQNPGGELTQALRLLDELQLQLSAVSRDSSPEQAAFKMARQRMDGQQ
PLLGNLRDTAARFPQPLKGWFEGIADQSWRQLLDDAYGFVNQHYQNEVYGFYAKAIQRRY
PFDAHAGSDVALGDFQAFFKPRGAMARFYESYLRPFVIVEGNRYRLRGIEGRSLPMSRSL
LEQLTRAQIIRQGFFTEDQGELAVRFTLAPYSLDQAVSRATLRVGDQQLEYRHGPIVPVA
FHWPNEAENGRSSLVLERGAERPLGIEKDSGAWSLFRFFDLMQSEPASGRDAQVLKADLA
GLRANYLLTSQRDSSPFQMATWRTFRLPEQL