Protein Info for GFF2982 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1183 transmembrane" amino acids 760 to 783 (24 residues), see Phobius details amino acids 897 to 920 (24 residues), see Phobius details amino acids 932 to 933 (2 residues), see Phobius details amino acids 935 to 945 (11 residues), see Phobius details PF01558: POR" amino acids 768 to 953 (186 residues), 68.4 bits, see alignment E=9e-23 PF20169: DUF6537" amino acids 981 to 1176 (196 residues), 212.7 bits, see alignment E=5.8e-67

Best Hits

Predicted SEED Role

"Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits" in subsystem Aromatic amino acid interconversions with aryl acids

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1183 amino acids)

>GFF2982 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits (Hydrogenophaga sp. GW460-11-11-14-LB1)
MNARIDALHAPTPADPDLREVSLDDKYTATHGEIYLSGIQALVRLPLMQRLRDQAAGLNT
GGFVSGYRGSPLGGLDEALWKARPQLDAHHVRFVPGVNEELAATAVWGSQQVHLLGESDY
DGVFGLWYGKGPGVDRSIDVFKHLNHAGTSPHGGVLLVAGDDHGAYSSTLPHQSDHVFAA
SMIPVLYPCNVQEYIELGLHGWAMSRFSGCAVGFKALADTVESSASISADPFAVQTRLPG
EFVLPEGGLNNRLSTDTLGVQARKQEALMQDHKIYAAMAYARENRLNRVTIDAAQARLGI
VASGKSYLDVLEALEELGIDEALAAEIGIRLFKVSMPWPLEPEGIREFSRGLEEILVVEE
KRQVVEYQLKEQLYNWREDVRPRVIGKFDERGEWDVHNPRGRGDWLLPPKTDFSVAQVAR
VIAARIRRLGLQTHTEDLIRSRLDFLEAKDRLLQRTVATPTRPAWYCSGCPHNTSTRVPD
GSFALAGIGCHVMATAIYPEFNKLTTQMGGEGTPWIGASAFSKVPHVFSNLGDGTYYHSG
SLAIRAAVAANRTMPVRITYKILYNDAVAMTGGQPVDGPIGVREIARQLSAEGVGRIAIV
TEDLGRYPDREGLPAQATLHDRAELDAVQRALREEPGVSVIIYDQTCAAEKRRRRKKKEI
PQATERVFINEAVCEGCGDCGQQSNCTAILPKETPLGRKRAIDQSSCNVDLSCLKGFCPS
FVTVTGSAPRRAQAASRAGDTRPDFDALPLPPAPSLAEPFNILITGIGGTGVITIGALLG
MAAHLERKGASVLDMTGMSQKNGAVTSHVRIAARPAQLRAQRIATGEADLILACDMLTAG
AADAVAKMRPGRTLALVNRHEQPAGPFARDPDWQFPAEDLQGLIRDATGERAEFLDVTAL
ATALLGDAIGANLFLLGLAFQRGALPLSLAALLRAIELNGVAVAANVQAFQWGRLAAIDL
ERVRRQAQPAQTVTLHRPQTLRQTVEHRVALLTAYQGAAYAAGFSAFVDRVSRAEQAAVG
GERLSQAVASNLAKLMAYKDEYEVARLFGAAEFRTQLEAAFEGPLKLNYHLAPPSLDGQG
GPRKRRIGAWVGRAFPLLARLKFLRGTRLDPFGRTAERRMERALIDEYRAHIERELEGLS
GATLPRALAVARVPETIRGYGHVKLASVATARVQWTALSTARP