Protein Info for PS417_15180 in Pseudomonas simiae WCS417

Annotation: acyl dehydratase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 296 PF01575: MaoC_dehydratas" amino acids 192 to 254 (63 residues), 46.8 bits, see alignment E=1.1e-16

Best Hits

KEGG orthology group: None (inferred from 93% identity to pfs:PFLU3527)

Predicted SEED Role

"Acyl dehydratase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UG86 at UniProt or InterPro

Protein Sequence (296 amino acids)

>PS417_15180 acyl dehydratase (Pseudomonas simiae WCS417)
MDYVTQIIDPPPSRTRLLLDGVRALRKPKLDGAPVLPKERLVRSAVALSAGDIAAYGRAC
GFRREQGVPLCYPHVLAFPLHLMLLTRPSFPFPASGMVHLANRIRQHQRLHEGQALRIEV
YCERWVAHPKGQALSIATRAFGADTLVWESDSLYLRRDAKDPVGEPWEDALPLQEEGLLR
TQRWVLPADLGRRFAKVSGDFNPIHTSVIGAKLFGFRRAIAHGMWTLGRALAAQQPPGGL
DQAEAHCDFKLPIFLPGQVALWRRPVTGPRREFEVRNFAGDKPHMRGLFIWKENLE