Protein Info for PS417_15155 in Pseudomonas simiae WCS417

Annotation: RND transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 791 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 235 to 257 (23 residues), see Phobius details amino acids 264 to 286 (23 residues), see Phobius details amino acids 292 to 309 (18 residues), see Phobius details amino acids 336 to 359 (24 residues), see Phobius details amino acids 368 to 393 (26 residues), see Phobius details amino acids 423 to 441 (19 residues), see Phobius details amino acids 623 to 641 (19 residues), see Phobius details amino acids 648 to 670 (23 residues), see Phobius details amino acids 676 to 695 (20 residues), see Phobius details amino acids 722 to 742 (21 residues), see Phobius details amino acids 750 to 774 (25 residues), see Phobius details PF03176: MMPL" amino acids 476 to 773 (298 residues), 101.8 bits, see alignment E=2e-33

Best Hits

KEGG orthology group: K07003, (no description) (inferred from 97% identity to pfs:PFLU3521)

Predicted SEED Role

"FIG005548: transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UIS1 at UniProt or InterPro

Protein Sequence (791 amino acids)

>PS417_15155 RND transporter (Pseudomonas simiae WCS417)
MSSHHNDKATFLERLIFNNRPAVIVICLLVSIFLFWQATLIRPSTSFEKMIPLKHPFIEK
MMEHRNDLANLGNTVRISVEAKDGDIFTKEYMETLRQINDEVFYISGVDRSGLKSLWSPS
VRWTEVTEEGFAGGEVIPQSYNGSPESLDQLRNNVLKSGQVGRLVANDFKSSIVDIPLLE
SYPDPQDQGKLLALDYRKFSHELEDKIRTKFQEQNPNVQIHIVGFAKKVGDLIDGLIMVV
LFFGVAFGITLVLLLWFTNCLRSTIAVLSTTLVAVVWQLGLMHAAGFGLDPYSMLVPFLI
FAIGISHGVQKINGIALQSSEADNALTAARRTFRQLFLPGMIAILADAVGFITLLIIDIG
VIRELAIGASIGVAVIVFTNLILLPVAISYVGISKRAIAKSKKDANREHPFWRLLSKFAS
PKVAPVSVFLALIAFGGGLWYSQNLKIGDLDQGAPELRPDSRYNKDNNFIISNYSTSSDV
LVVMVKTKAEGCSRYEAMAPIDQLMWKMQNTEGVQSAISLVTVSKQMIKGMNEGNLKWET
LSRNPDVLNNSIARADGLYNNNCSLAPVLVFLNDHKAETLDRAVHAVQDFAKENNKDGLE
FILAAGNAGIEAATNEVIKESELTILILVYLCVATMCMITFRSWAATLCIVLPLVLTSVL
GNALMAFMGIGVKVATLPVVALGVGIGVDYGIYIYSRLESFLRAGLPLQEAYYQTLKSTG
KAVLFTGLCLAIGVCTWIFSAIKFQADMGLMLTFMLLWNMFGALWLLPALARFLIKPEKL
AGQKGNSLFAH