Protein Info for PS417_15150 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1636 PF20178: ToxA_N" amino acids 378 to 624 (247 residues), 64.4 bits, see alignment E=6.6e-22

Best Hits

KEGG orthology group: None (inferred from 70% identity to pfs:PFLU3519)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See U1T6Y9 at UniProt or InterPro

Protein Sequence (1636 amino acids)

>PS417_15150 hypothetical protein (Pseudomonas simiae WCS417)
MTDPNTPPAAHPTRQAVEAQFRTRPTLRSVTAQMLTTHLKEHYPPLVHPVGELRLAVPRD
GGGRALLPLLEVTLGYMADGNFPDLSARNNLDCYLGDATGTRLTFQANGARDYDVAVIEA
VIRELPTLLFIGFQDALATYWSQDSDAGGSRWQWLAKVLQGSLLDSAIGQAGAAMPALKT
LATLARYPDRATRARRPGREGAVHAYTLETHLDQARSRLTLQAIDLLVVCQAQVLLCRVS
GEIEAYADLDAFGQAWGARMQQRYGADRITWQQYEPDGNIFEVQAALIINQQLDNLAAIE
LPGTSSVQALEDVFATATDPALVFSASSSTPRTTLASIQAGLPGWLQRASTADRLAYHQC
LLEQAGIRRLTLGDSDFAGVETLRSYATEHLNHQLCLDRAQALGGRRHCDDAARVAGYNA
DDLELTFHVPVGTLAGGYVEPVCISLVDLALQNLSGAPKGRMTLRHRAGRELEAWLTDDY
IRQLVQRVDIGQNYPRYLRQALMSDTDVARKRQRLFEQQRPVHLKTQALEHKIKGQAGLT
HRGVRCVSAVLDPEPLAQQVDDDAIVIRALAFLRKPGATADVVQNMFIIEPRDTQRGPHV
LYRPAYRDALLEFADRDSLLAAIAVPGALQDSVLTWLPETARAIYSNGGFTQPHIVRVGM
GSEFAPLPSVPEPAQLAGAGDESSDEILQALNNGRLMEYLFGSETRQLLDQAERASTSNR
ESRWALIIEGMQLGFNTLLMAVRGPLAAVGWLMQLVQSLTQDVPALESHDPTARELAWVD
LLQNIAMLLLHHGSVTVAPDTAVPDAQVMTRQPFRRRPAGSPLTRTVLIEHGKIGVPSEP
PGGGRTLLDFDQSVASDAAASKLLNTLRAVNIAWPTPPPNPISIGPHQGLYRIDGLWHAS
VGGLLFRVSITPGFGDVFIIHPQKPDHPGIKLKTDGKGHWTLDRGLKLLGGGPKRMASLR
EENQRRKAELIARGEALNSEINVLMPPFLATMDQMLSALTALKNQRKTVRLVWDLLQKAT
SQQKPALAERHQREILEHQARRTEFKILLQNLEDQFAQSLSPRLEMVKVGKELERVGGAG
THVQERARILGTIWDQQLAIHTLLLDRLNAMRFSRAGEPMEHMARRMFIDNLLEDFTVYE
EYISNTVESANIRQHMAEVSTAMEQTLEQLAQDSVAGRAIRQEKLSRIQFPQNFFADNLK
LNTLSYLTAASLDKTHTSVVPLERFYLDRLEQTDLFETLQSHIDVRSGAEYPLADQRDVY
ETVLNEYRRYEEGIRALKIINPRCLRPEAERLLTGLEYAQALAQTELEGVVSKQEALDVE
LPLSKTLRPKPASKRVFKTRKKKYLVGDLKQTNAQQLEEQFTIVDTPTGETIATFNRHED
GWEATSDTPAASAEPAPTGRSLATIKGLALALVNERKGIGQLIEAEQKKLDSALTRQHVD
PGNWNELLTGQAAKLTALADELLREHLEQKPAVQRLIDEYRDEARDMTRQAERLCSNAYK
RQWPTQESLNYLWEHNQIDINLTSVADLQRPTLSGDFFTEYAVYDKAKKPPVVLWYAHFH
YASADAPPAHYTRAHLKLAEQRKYTQKDLLKEHVQAHLRQQPEPSAVPLSRVLYVLITPP
VDQIFLKIVQAPRPRQ