Protein Info for PS417_15120 in Pseudomonas simiae WCS417

Annotation: chromosome segregation protein SMC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1212 transmembrane" amino acids 1125 to 1142 (18 residues), see Phobius details PF13476: AAA_23" amino acids 6 to 220 (215 residues), 109 bits, see alignment E=7.8e-35 PF13555: AAA_29" amino acids 27 to 56 (30 residues), 27.6 bits, see alignment (E = 3.1e-10) PF13558: SbcC_Walker_B" amino acids 1114 to 1171 (58 residues), 36.4 bits, see alignment 7.8e-13

Best Hits

KEGG orthology group: K03546, exonuclease SbcC (inferred from 92% identity to pfs:PFLU3513)

Predicted SEED Role

"Exonuclease SbcC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U2F7 at UniProt or InterPro

Protein Sequence (1212 amino acids)

>PS417_15120 chromosome segregation protein SMC (Pseudomonas simiae WCS417)
MKILAIRLKNLASLAGPFEIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGAVPR
LGDTGQAKMPDADSDISIGDPRTLLRRGTGGGYAEVDFVGVSGRRYRARWEANRARDKAS
GKLQNSRQSLIDLDSDQLLASQKTEYKTQLELALGLNFEQFTRAVLLAQSEFSAFLKAND
NERSELLEKLTDTALYTQLGRRAFDKAKEAREAHKQLQDQATGVVPLAAEARAELDQQFD
AAQQHLKTQQAQLKQLELQHTWLKELREWQERQLATTEQLQRAQAEWDNQGQQRDDLSRL
DQLAPQRHQFARQAELSTLLAPLAAQIQLHRQQQGELHTRQEQAQQQQASAQTALAQALK
NQADAVPLLRQAFEEQSTLAHLTKELAKRIEDKQQHESACIEGQRQLTGLLEKQNQVAER
LQRLSTELDRSAALAPLSDAWTAYRDRLQQLMLIGNRLNKGQAELPQLEQRATSAAEQFT
QQREALDLLYQEAGAEPHAVAEQIQLLASLLQDNRKQQRAFEDLTRLWDNQQQLDQQAAT
LTQKLTDAQQQREQLNQAGLQTKAELSVAEQTLNVTKQLLERQRLARSASVEELREQLQD
DQPCPVCGSHEHPYHQPEALLQSLGRHDENEEAAAQKAVDTLKEKLTELRGEVGGLIAQQ
KEYLQQQEHLATQQQALKPSLDAHPLYASLLNQETAKRSAWLEQQLGQLTQSISQDEQRQ
GALLNLQQNAGRLQQQLQAAQDASQQARQLLVDQQRELAGDRERLDQELSAFANLLPADT
LEGLRAEPAATFMQLDQQVNQRLEQLGHQRDELAEQQDRQQAIEKEQTHQQHRQQQLDAL
LQQVNELASQQQTAQAKLSALLGEHSSAEHWQQQLEQAVTQSRQSETDANKQLQEIHNAL
IELAADLKAQQEREHALQAEHHALATRISEWRALHPELDDAGLSHLLAYDDAQVSQLRQQ
LQLSEKAVEQAKVLLQEREQRLADHQALHNGNLEAQALDSALATLNQQLAEGEKICAELR
ARQSEDQRRQEANQAFAEHIAKAYDEWQRWARLNALIGSATGDTFRKIAQAYNLDLLVHH
ANVQLRQLVRRYRLKRGGSMLGLLVMDTEMGDELRSVHSLSGGETFLVSLALALGLASMA
SSTLKIESLFIDEGFGSLDPESLQLAMDALDGLQAQGRKVAVISHVQEMHERIPVQIQVK
RQGNGLSTLEVK