Protein Info for GFF2938 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: ATP synthase protein I

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 168 transmembrane" amino acids 43 to 65 (23 residues), see Phobius details amino acids 71 to 92 (22 residues), see Phobius details amino acids 108 to 133 (26 residues), see Phobius details amino acids 139 to 159 (21 residues), see Phobius details PF03899: ATP-synt_I" amino acids 45 to 147 (103 residues), 50.1 bits, see alignment E=1.6e-17

Best Hits

KEGG orthology group: K02116, ATP synthase protein I (inferred from 49% identity to pol:Bpro_0320)

Predicted SEED Role

"ATP synthase protein I" in subsystem F0F1-type ATP synthase

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (168 amino acids)

>GFF2938 ATP synthase protein I (Hydrogenophaga sp. GW460-11-11-14-LB1)
MTQGHSIPPARADQEDGEQESDFKPLTREEAQQWRVGQPVLSLWRLVMVQWLVGLAASIV
GGLLWQSSSVAWSVLYGAAAVAIPSALMAYGLTSSAMSRVWAAHANAAFAGFLLWEGVKI
LLAVVMLAAAPWVVSPLNWFGLLVGLVLVLKVYWFGYFFQARRSNANG