Protein Info for GFF2934 in Variovorax sp. SCN45

Annotation: FIG002076: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 430 PF04285: DUF444" amino acids 6 to 426 (421 residues), 599.1 bits, see alignment E=2.7e-184

Best Hits

Swiss-Prot: 56% identical to Y986_VIBPA: UPF0229 protein VP0986 (VP0986) from Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)

KEGG orthology group: K09786, hypothetical protein (inferred from 96% identity to vpe:Varpa_1880)

Predicted SEED Role

"FIG002076: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (430 amino acids)

>GFF2934 FIG002076: hypothetical protein (Variovorax sp. SCN45)
VAILQQIIDRRLSGKNKSIGNRERFLRRYKGQIQEAVRRAVSGRNIRELEQGEDVTLPRH
DVSEPVFGHARGGDREYVHPGNQEYLKGDRIKRPEGGGGGGSGSGEASDSGEGEDDFVFR
LTREEFMRVFFDDLALPHLIRTQIADVPEWKSHRAGFTSDGSPNNLHVVRSMRGALARRI
ALGGEPRKELKRLEAHLEQLKQHPQAAQALIQNEIRETEERIEELRRTMRHVPYIDPIDL
RYRNRVKTPVPSAKAVMFCLMDVSGSMDEARKDMAKRFFMLLYMFLTRHYEKIDLVFLRH
HTQAQEVTEEEFFHATETGGTVVSSALVLMDEIIKARYPSGEWNVYGAQASDGDNWHQDS
GRCRELLVDNILPVVRYYAYVQVAETEQNLWQEYQQLEGVQPNFAMRKVSDAQDIYPVFR
DLFKKEGVTS