Protein Info for GFF2919 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Peroxiredoxin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 168 PF08534: Redoxin" amino acids 3 to 163 (161 residues), 124.7 bits, see alignment E=2.7e-40 PF00578: AhpC-TSA" amino acids 4 to 127 (124 residues), 40 bits, see alignment E=3.5e-14

Best Hits

Swiss-Prot: 33% identical to PMPA_CANBO: Putative peroxiredoxin-A (PMPA) from Candida boidinii

KEGG orthology group: None (inferred from 89% identity to pol:Bpro_0266)

Predicted SEED Role

"Peroxiredoxin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (168 amino acids)

>GFF2919 Peroxiredoxin (Hydrogenophaga sp. GW460-11-11-14-LB1)
MIKVGDKIPATTLMEYSEVEGNGCNIGPNPVDVQKASAGKTIAVFALPGAFTPTCSAKHV
PGFVQHAADFKAAGVDEIWCLSVNDAFVMGAWARDQKTGDKVRMLADGSADFAKATGLTL
DLTARGMGLRSNRYSMLVKDGVVQSLNVEGPGKFEVSDANTLLAQAKA