Protein Info for GFF2912 in Pseudomonas sp. DMC3

Annotation: Ecotin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 161 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF03974: Ecotin" amino acids 29 to 151 (123 residues), 168.1 bits, see alignment E=3.9e-54

Best Hits

Swiss-Prot: 80% identical to ECOT_PSEPF: Ecotin (eco) from Pseudomonas fluorescens (strain Pf0-1)

KEGG orthology group: K08276, ecotin (inferred from 80% identity to pfo:Pfl01_2620)

Predicted SEED Role

"Proteinase inhibitor I11, ecotin precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (161 amino acids)

>GFF2912 Ecotin (Pseudomonas sp. DMC3)
MNSLRICAITGLLIANLSTLAHAAKLEDVAPYPKAEAGFTRQVIHLPKQEQEENFQVEIL
AGKTLEVDCNRQRLGGVLDEKNLQGWGYPFYRLEKVIGPMSTMMACPPGSQKKRAFVPVV
GDGFMLRYNSKLPVVVYAPSDVEVRYRIWSASDKVGTALQE