Protein Info for GFF2908 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 383 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details amino acids 35 to 54 (20 residues), see Phobius details amino acids 60 to 81 (22 residues), see Phobius details amino acids 92 to 111 (20 residues), see Phobius details amino acids 121 to 140 (20 residues), see Phobius details amino acids 147 to 170 (24 residues), see Phobius details amino acids 193 to 215 (23 residues), see Phobius details PF00990: GGDEF" amino acids 224 to 377 (154 residues), 123.8 bits, see alignment E=3e-40 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 224 to 381 (158 residues), 125.3 bits, see alignment E=9.8e-41

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (383 amino acids)

>GFF2908 hypothetical protein (Xanthobacter sp. DMC5)
MTDATFLLLINCAIGLTFAAAFLAVSWRSSVRLGRWCAAAFACAAATVLTEAMAPDIPSV
RLASTLSFGSLMAAVFFIAAGMLRHYRPDSRLGWPGAAALFSVAFTGLAGVDLPRGGWAQ
ALTYQLPFAAMLAFAAGIVLRHSPGRAVDLVLAGVLGLCALQFAAKAVLIPLDGADNGVR
DYLTSAYARYSQTAGSILSLMLGVALLALVVTEVIAEATGRLERDGLSGVLTRTAFLERA
ERLADTAPPGSGIGLLICDLDHFKAINDRFGHSAGDEVIRRFGAVLASCAGPADLCGRIG
GEEFCLLMPAANAASLLRVAQRLREATEHLSWPGLPPGHRVTTSLGAALAASGEPLATAM
RRADMALYRAKAEGRNRVQLADG