Protein Info for PS417_14870 in Pseudomonas simiae WCS417

Annotation: transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 296 transmembrane" amino acids 18 to 38 (21 residues), see Phobius details amino acids 44 to 65 (22 residues), see Phobius details amino acids 77 to 97 (21 residues), see Phobius details amino acids 103 to 122 (20 residues), see Phobius details amino acids 131 to 149 (19 residues), see Phobius details amino acids 155 to 174 (20 residues), see Phobius details amino acids 186 to 208 (23 residues), see Phobius details amino acids 219 to 239 (21 residues), see Phobius details amino acids 246 to 268 (23 residues), see Phobius details amino acids 274 to 291 (18 residues), see Phobius details PF00892: EamA" amino acids 17 to 141 (125 residues), 52.5 bits, see alignment E=3.3e-18 amino acids 158 to 287 (130 residues), 54.3 bits, see alignment E=9.2e-19

Best Hits

Swiss-Prot: 68% identical to YDEK_BACSU: Uncharacterized transporter YdeK (ydeK) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 91% identity to pfs:PFLU3461)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UG30 at UniProt or InterPro

Protein Sequence (296 amino acids)

>PS417_14870 transporter (Pseudomonas simiae WCS417)
MERTSPINTLDTRTQGWINGFIGVVIFSGSLPATRLAVMEFDPAFLTMIRAAIAAALGVL
LLWLFKEKRPARNQWGPLVVVALGVVIGFPLLTALALQYVTSAHSIVFIGLLPLATAVFG
VLRGGERPRPVFWMFSILGSVCVMGYAFAQGLSAAPAGDLLMLLAVLACGLGYAEGATLS
RSLGGWQVICWALVVSVPVVVPLSLVLAPTHFSGISLPAWLSLGYVSLFSMLIGFVFWYR
GLAQGGIAAVGQLQLLQPFFGLALAAGLLHEQVSLGMVLVTVAVIGCVAGAKKFAH