Protein Info for GFF2906 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Protein yifE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 112 PF04219: DUF413" amino acids 10 to 97 (88 residues), 129 bits, see alignment E=2.7e-42

Best Hits

Swiss-Prot: 100% identical to YIFE_SALTY: UPF0438 protein YifE (yifE) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: K09897, hypothetical protein (inferred from 100% identity to sec:SC3805)

Predicted SEED Role

"Protein yifE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (112 amino acids)

>GFF2906 Protein yifE (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MAESFTTTNRYFDNKHYPRGFSRHGDFTIKEAQLLERHGHAFNDLDLGKREPVTEEEKLF
VAVCRGEREPVTDAERVWSKYMTRIKRPKRFHTLSGGKPQVEGAEDYTEADD