Protein Info for GFF2900 in Variovorax sp. SCN45

Annotation: Subtilisin-like serine proteases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 540 PF17957: Big_7" amino acids 468 to 519 (52 residues), 27 bits, see alignment 2.9e-10

Best Hits

KEGG orthology group: None (inferred from 75% identity to vpe:Varpa_4390)

Predicted SEED Role

"Subtilisin-like serine proteases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (540 amino acids)

>GFF2900 Subtilisin-like serine proteases (Variovorax sp. SCN45)
MDEVGRAAPSTHRLKFFVDPELAADIGAAEAGRRLAQYVADVNTVFTRETVRSFVFDPAT
DLQLVAPTAAPACSYNGLVNGEVVVCVTKSTRGYSHGGLSTSWTFPQKGVTWNLNWIAIH
DPLRLSRAITPAAPESTEKDYLGRQLKTLLHELEHVFGAGAGEYYNGIAVADTTGIAPIT
DLALSNDTDRYWWTRQSWRLDPLLGTVFEQRRDPAANRVATLDMIRFTAGTKANIDTDWT
DWPKLGSSKFMAATTATQVRVTDRDSGAALPGAQVTVWRNPGGQKPLVLLVTGVADASGR
FQFDWECGFSCFAVGKSTLLVKANAPGRAPGASWFTIFDAFEQKAVQGQPMFTIDLALGN
ADTTPPTVSVSAPATATVGQPTTIAPAVVDNVGVFGVKVLGRDSIPICTFTAPPYTCIWT
PTSPGVQTIRVVGVDAAGNSASASANVIVNPPEGSTPPAVAMSVPPTASAKAPVPLAANA
SSNVAEVRFVVDGKTVCRLQAAPYACSWMPPAAGYANIEARATDAWGNVASVSALTRVTP