Protein Info for GFF2890 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Rubisco activation protein CbbO

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 534 PF00092: VWA" amino acids 351 to 498 (148 residues), 28.1 bits, see alignment E=1.2e-10

Best Hits

Predicted SEED Role

"Rubisco activation protein CbbO" in subsystem CO2 uptake, carboxysome

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (534 amino acids)

>GFF2890 Rubisco activation protein CbbO (Hydrogenophaga sp. GW460-11-11-14-LB1)
VDGLIARVSHALWGQPLRVDTQLQPPGAAARAVLTGDDATGCVLHLPPRGVTTPDFALAV
AAHAAAHMRFGGPPQSRRGLKPVQQALLGALEDARVEGLALQELPGLRAVWWPHHAGAAA
ARGSGFDDLLARLSAALLDLAHTDPHPWVARVKAQFFEADGRTPALRTAEDVRRAASVLG
HDIGQMRLPFNPRTYAVHAAYRDDNSHLWLPDDTLPPSDAVLAQATGPAGADGAPVGGDT
PQAAREPTVAVHAEWDHRIGRYRPDWCSVQAPAPAWEGRPWLPDAQAPARRLVLRLARVP
GRLESLGGRSASGEHLHAAALVDAWADLRAGRTPDARVHLRQGRPLPPLAVLMLLDASAS
TARGLALVDMQQAATATALALQRLGHRSALWAFSSQGRHRVQMPCLKAWDDRAAPAAPAL
RGEGSTRMGAALRHGLWLSAGDARRHPVHRRVIVLLTDGELHDVDVHDPAYLPADLRRAA
REAQALGVAVRALVFGSGPADALDAALGRGHGIGVREPSAWPGAICRALARLPT