Protein Info for GFF2887 in Variovorax sp. SCN45

Annotation: Thioredoxin-like protein clustered with PA0057

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 243 PF01323: DSBA" amino acids 14 to 193 (180 residues), 38.1 bits, see alignment E=7.4e-14

Best Hits

KEGG orthology group: K07396, putative protein-disulfide isomerase (inferred from 77% identity to vap:Vapar_1753)

Predicted SEED Role

"Thioredoxin-like protein clustered with PA0057" in subsystem PA0057 cluster

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (243 amino acids)

>GFF2887 Thioredoxin-like protein clustered with PA0057 (Variovorax sp. SCN45)
MSAATGTATTLHYIFDPLCGWCYAAAPLVDAAREVPGLKVEFHGGGMMTGANRRPITPQW
RDYVMPHDHRIAEMTGQPFGQDYFEGLLRDTGAVMDSEPPTTAVLAAESLRAGGGLDMAH
RLQQAHYVEGRRIADVDVLKAVAADLGFDADAFAAAFARLSGAPTAQHIAESRQFLQRAG
GQGFPTFVLAQPDGRAGRIDIGPWLGRAEDWKAQLAALVAASQPAPTDAGAVPPVCGPDG
CAI