Protein Info for GFF2885 in Sphingobium sp. HT1-2

Annotation: FIG017823: ATPase, MoxR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 329 PF20030: bpMoxR" amino acids 16 to 199 (184 residues), 46.3 bits, see alignment E=8.5e-16 PF07726: AAA_3" amino acids 46 to 180 (135 residues), 210.4 bits, see alignment E=2.2e-66 PF07728: AAA_5" amino acids 46 to 178 (133 residues), 44.6 bits, see alignment E=4.7e-15 PF00158: Sigma54_activat" amino acids 46 to 164 (119 residues), 21 bits, see alignment E=6.8e-08 PF00004: AAA" amino acids 48 to 184 (137 residues), 23.5 bits, see alignment E=1.9e-08 PF17863: AAA_lid_2" amino acids 255 to 320 (66 residues), 56.8 bits, see alignment E=4.7e-19

Best Hits

KEGG orthology group: K03924, MoxR-like ATPase [EC: 3.6.3.-] (inferred from 82% identity to aex:Astex_1208)

Predicted SEED Role

"FIG017823: ATPase, MoxR family"

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.-

Use Curated BLAST to search for 3.6.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (329 amino acids)

>GFF2885 FIG017823: ATPase, MoxR family (Sphingobium sp. HT1-2)
MTDISEAEIQQKLVRLGELRAAIGQAIVGQGAVVEQLLIGLLAGGHCLLEGVPGLGKTLL
VRSLGEALKLDFRRVQFTPDLMPSDILGTELLEEDHGTGHRSFRFQKGPIFTNLLLADEL
NRTPPKTQAALLEAMQERTVSYGGTTYQLPSPFFVLATQNPLEQAGTYPLPEAQLDRFLL
HIRVDYPTEQEEHDILAQTTGAKPGAVPAVMQGEEVLALQKLVRDVHFGEDLLRWVTRIV
RASRPGEGAPDEIRKYVKWGAGPRAGQSLILAAKARALLQGRLAATREDIVALAGPVMRH
RLLLSFAAEAEGKSADDVVAALVRALPLG