Protein Info for GFF2882 in Pseudomonas sp. DMC3

Annotation: p-hydroxybenzoic acid efflux pump subunit AaeB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 711 transmembrane" amino acids 17 to 39 (23 residues), see Phobius details amino acids 45 to 63 (19 residues), see Phobius details amino acids 70 to 87 (18 residues), see Phobius details amino acids 93 to 112 (20 residues), see Phobius details amino acids 119 to 136 (18 residues), see Phobius details amino acids 142 to 166 (25 residues), see Phobius details amino acids 378 to 400 (23 residues), see Phobius details amino acids 406 to 425 (20 residues), see Phobius details amino acids 436 to 457 (22 residues), see Phobius details amino acids 463 to 497 (35 residues), see Phobius details amino acids 512 to 536 (25 residues), see Phobius details amino acids 595 to 612 (18 residues), see Phobius details amino acids 674 to 691 (18 residues), see Phobius details PF04632: FUSC" amino acids 19 to 681 (663 residues), 472.6 bits, see alignment E=2.7e-145 PF13515: FUSC_2" amino acids 32 to 162 (131 residues), 49.7 bits, see alignment E=4e-17

Best Hits

KEGG orthology group: None (inferred from 88% identity to pfo:Pfl01_2655)

Predicted SEED Role

"FIG00958550: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (711 amino acids)

>GFF2882 p-hydroxybenzoic acid efflux pump subunit AaeB (Pseudomonas sp. DMC3)
MSALYTYFKALIHPGQAVLLFALRTIAAGLLTLYLAFIFDLEQPKWSIMAVVIVSQPLAG
MALARSFGQVIGTTVGAAVAVLIMAIFPQAPLPFITTLALWLALCTAGGTLLRYTSSQAF
VLSGYTAVVVALLAIPDQDGTFLLAVTRVTETLLAVACVCVVSLLTARPEAVTKGYFAKI
DQVIKLAASHAAEVLRTEESEADFQRRQMQLLGEISALEGLRRHLYFDAPRLRSADNLVL
LLGNQLMLLTSRLTALRHQRELLIERWEGDLPLEVQQLRAEELALLEQLAQQGRALSGAD
RQRFVTLQQQFEALAYKAEQQTENMSATLRSLAWALRWEQARLLQQLEQILELSDAIQEG
RPASCLYRGQSSPLHLDFTLASMNAIRAFTALLVSGLIWIETAWDGARGGMILVGILCSL
MATFPRPLMAAQSYARGLGLALVVSAFYQFMLVPAISDFELLALLLAPLLYAIAVGISSP
ATAGIGMGLGLSSFLMLGPQNTGTGQNTAIQWFEFAGAYVSAAMLALIVYALIFPFRPGL
RIRRLYGEAREQVYQLSKLPATDEQQFAFESRMTDRLTSMLGLLPAANDRAMQRLYEISL
ACVALGVAMHQLRQQAQNNALLTDAFGQRLASALRKTGRLVAGRDDVQLAALLATLHQLG
DELDELHAVSHEHLWSVFRMRVALLIVVSFLERHGDYLQPQGLEGEPQLAH