Protein Info for GFF287 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 418 transmembrane" amino acids 21 to 46 (26 residues), see Phobius details amino acids 59 to 81 (23 residues), see Phobius details amino acids 89 to 107 (19 residues), see Phobius details amino acids 115 to 136 (22 residues), see Phobius details amino acids 148 to 169 (22 residues), see Phobius details amino acids 175 to 194 (20 residues), see Phobius details amino acids 229 to 248 (20 residues), see Phobius details amino acids 267 to 287 (21 residues), see Phobius details amino acids 294 to 313 (20 residues), see Phobius details amino acids 319 to 343 (25 residues), see Phobius details amino acids 356 to 378 (23 residues), see Phobius details amino acids 386 to 406 (21 residues), see Phobius details PF07690: MFS_1" amino acids 28 to 371 (344 residues), 144.1 bits, see alignment E=8.2e-46 PF00083: Sugar_tr" amino acids 29 to 196 (168 residues), 59 bits, see alignment E=6.4e-20 PF06779: MFS_4" amino acids 46 to 401 (356 residues), 35.1 bits, see alignment E=1.5e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (418 amino acids)

>GFF287 hypothetical protein (Variovorax sp. SCN45)
MSSLPLSWARSPSGISSRASRYSIFVCFLVALIDGYDTLMLSFVAPLISKEWGMPPGAFG
KVFAVSFAGAVVGAIAVGAAADRFGRRRLLLGSILMAGGFILLSAGSNTPEQLMAWRFLS
GIGLGGAIPTISALAAEHASPDRRSATVSRMFLGFPIGAVAGGAITAALMQQVGWRGIFI
GGGALALALLPLVFSMSEPGRDIAHATDAQPAHAKHPLAELIADGRGAGTALIAIAAFMI
LLVSYFLLSWTPSVLAMNGMSPQHSALAGVMLNVGGVAGAFAMSFVVARRSPFGPVSICL
ALGALLVPLFGFHVVGSEIAAFCLVFAIGLLVIGGQMNIPALCVDYYPASVRATGVGLSM
AVGRIGSIVGPLVGGLLVSAQLPWSRLFMLAAAPALLAAAALGWIAHGRKRNGPNRPA