Protein Info for GFF2862 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1109 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF17132: Glyco_hydro_106" amino acids 32 to 911 (880 residues), 1007.5 bits, see alignment E=4.8e-307 PF22666: Glyco_hydro_2_N2" amino acids 995 to 1066 (72 residues), 30.5 bits, see alignment 3.8e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1109 amino acids)

>GFF2862 hypothetical protein (Sphingobium sp. HT1-2)
MTRKALRLAALLTCASLAMPAQADDLADGFNNPPQSARPRVWWHWLNGNVTKDGIDKDLD
WLARIGIGGVQNFDANLQTPQIVKERLVYMTDGWKDAFRHAVQTADAKGLEFAIAASPGW
SETGGPWVKPQDAMKKLVWAQTEVEGGQRVKGALPAPSNVTGAFQSAKFSDPLAGDAEIP
DQPRAYGEARVLAYPIATAPLPTPRILDADGQPIARAEALGDSDLETVAQMAKGDEAHPG
TLILDYGKPVTVRSASLFVPHARPPFGAPAYRPTIEAETAQGWQPLGRFSLTEVASTTSF
APVTAQRFRLVLSPNDAAKSPGLGDGAPGAVMIDVFGRPASPTLGIGDLRLSAEARIDQY
EAKAGYAIASDYNRLSMGPADAPAIDPARVIDLTDRLRPDGTLDWTAPRGTRWRIVRMGW
SLTGKTNHPATPEATGLEVDKYDAAAVRRYLETYLAMYRDAVGADWIGKKGISALLTDSI
EVGASNWTPRMVEEFKARRGYDPVPFLPTLTGAVVGSAARSDAFLHDYRQTLADLLADAH
YGTVAKVAHENGLTVYGEALENGRPVLGDDLAMRSHTDVPMAAMWTFNRGSAPRPTLIGD
MKGAASVAHIYGQNIVSAESMTSAFAPWAFAPADLKRVIDLEFVSGVNRPIVHTSVHQPV
DDKVPCLSLMIFGQYFNRHESWANMAKPWVDYMARTGFLLQQGRDHADIAYFYGEDAPIT
ALFEHGVPADLPSDYAYDFVNAEILATKASVQDGDLIAGKARYKALYLGGSSKVMTLATL
QRIAALVEAGATLIGTAPERAPGLQDDPAAFRALVAKLWSGQPVGKGKVIASADVDTALA
GTGTGADFRVTGSGDAGAYRFLHRALPDGDLYYVTNGKAQAEHIEARFRVTGRQPEIWRA
IDGSAAPLSYRTEGSDTIVPLDVGPEDAVFILFRKPAQSPGRTIAPAAVKPVATLSQPWT
VRFQPGRGAPAEIAMPTLTALDKSSDPGVRYFSGEATYASSFTLPRGAKAGAPLWLDLGS
VGDVAEVRVNGQVAGTSWFAPYRLDVGKLVKPGRNAIEVKVANLWVNRLIGDQQPGADKI
TFTAAPTYRPDAPLRPSGLIGPVTLSAEQ