Protein Info for GFF2848 in Variovorax sp. SCN45

Annotation: UPF0098 protein PH1269

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 210 PF01161: PBP" amino acids 50 to 187 (138 residues), 100.7 bits, see alignment E=4.5e-33 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family" amino acids 54 to 183 (130 residues), 63.9 bits, see alignment E=7e-22

Best Hits

KEGG orthology group: K06910, (no description) (inferred from 78% identity to vpe:Varpa_1969)

Predicted SEED Role

"UPF0098 protein PH1269"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (210 amino acids)

>GFF2848 UPF0098 protein PH1269 (Variovorax sp. SCN45)
MLEKLPDVIGHALQGVRAGLDNIVFNALGMREGMASIAVTSIAFADHAPIPARYTADGEG
LSPPLQWTNLPSGAAALLLIVEDADSPTPNPLVHAIVVGLPPESGSLAEDAIPRQDGGGV
GLHVGRNSALQAMWLPPDPPPGHGKHRYAFQVFALSQVPEFSDTPGREEVFEALRAHAIA
SGLLIGTCERPDGTIKIEEGIPSVGPLAAG