Protein Info for GFF2836 in Sphingobium sp. HT1-2

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 929 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details TIGR01782: TonB-dependent receptor" amino acids 46 to 929 (884 residues), 551.4 bits, see alignment E=2.1e-169 PF07715: Plug" amino acids 63 to 165 (103 residues), 58.2 bits, see alignment E=5.3e-20

Best Hits

Predicted SEED Role

"Predicted maltose-specific TonB-dependent receptor" in subsystem Maltose and Maltodextrin Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (929 amino acids)

>GFF2836 TonB-dependent receptor (Sphingobium sp. HT1-2)
MHQFRHTVLRAALLAGASFSFAAVAHAQTDAETATPAAPAAGESEGIVVTGIRASLASAA
KVKRDSVLIVDSISAEDVGKLPDVSIADSLARLPGVTAQRLEGRDQRLSIRGLGPDFSTT
LLNGREQVTVGDNRGVEYDQYPSEFFQNVNVYKSADAALIAAGISGTVDLRMLRPLDKND
RILAVSLRGQMNGMDKLNPDGERYGYRASATYVDQFADDTLGISLGFAASQTPSQNERFN
AWGYPTDADGNLIIGGAKPYVQSNLLKRYGMVGTLEWQPSDNFHSTFDVLASHFEEEQRL
RGIEFPLVWGTDVGVSDVTVENGFVTGATFSNVYGVQRNDYNKRKADTISLGWNNDIRLN
DRLKLNVDASWSRAKRTDFLLETYSGTGYLRSGVSDTVRVERQSNGLFSIVPTLDYTDTN
VISLTDPNGWGYNGTTAVVQAGFLNRPKFIDDMKSFRANLVGDISGSIFSNWEVGGNYSR
RKKTSAYTSYFLCPTGGTDCTIANGTPGSAPVPQEALLGKNVSLDYLGVPAMLTLDPLYL
YNNTLDAVFDNRPSSLVRDNVVKEDVFTGYAKMTLDGDLGGKPLKGAIGVQVIHTRQAST
GTISNFSNGVVTVVPASGKESFTNFLPSAQFSVELEPGFFVKMGAAQTMVRPRMDQERIN
QEYNFNLANVGLGSDPQYSPFSSNGGNIALRPYQSTNIDLSIEKYFPGGGYVSLAGYFKN
LTDFVDPNNNIAYDFSDVLASLPADIRNQIIADGSYIGLLKAPANTGKGTIMGAEGTVSL
PFKVFSETLDGFGIFASGSYTHSEVKYGSNPTDVVTLPGLSKWVASGTAYYEKSGFQARV
SYRYRSSFLGEVAGLSAAPTFRTAKAEGILDAQIGYEFQSGPLTGLSILLQGKNLTDQPF
VTYQNGDKRQVIDYQRYGRDYYLGLTYKF