Protein Info for GFF2802 in Methylophilus sp. DMC18

Annotation: Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 536 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 30 to 30 (1 residues), see Phobius details amino acids 88 to 109 (22 residues), see Phobius details amino acids 118 to 137 (20 residues), see Phobius details amino acids 143 to 162 (20 residues), see Phobius details amino acids 172 to 202 (31 residues), see Phobius details amino acids 214 to 233 (20 residues), see Phobius details amino acids 241 to 259 (19 residues), see Phobius details amino acids 265 to 283 (19 residues), see Phobius details amino acids 301 to 318 (18 residues), see Phobius details amino acids 324 to 342 (19 residues), see Phobius details amino acids 354 to 373 (20 residues), see Phobius details PF02366: PMT" amino acids 39 to 244 (206 residues), 48.3 bits, see alignment E=1e-16 PF13231: PMT_2" amino acids 67 to 231 (165 residues), 61 bits, see alignment E=1.7e-20

Best Hits

Predicted SEED Role

"Polymyxin resistance protein ArnT, undecaprenyl phosphate-alpha-L-Ara4N transferase; Melittin resistance protein PqaB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (536 amino acids)

>GFF2802 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase (Methylophilus sp. DMC18)
MSPVQIKQNSHLSHFLWLAVTLLWLGIAAVCRPLTLPDEGRYVGIAWEMLTSGNWAIPHL
DGLPYFHKPPLFYWITAASFKLFGPSLLASRLASLLAALLMAIALYWFTARHLDKKTAVL
AFVALVTQPFFFASAQFANLDMLVASMIAMTIMLAAEFIWSIEQGQLERKYLCMAMVFAA
GGVLAKGLIGMVLPVLVVGGWLLVSRRLASLKYFLWWPALVLFFLMASPWFLCMESQFKG
FLEYFFIHHHVQRFTGTHFNNQQPFWFYLPVLLALTLPASLWLTRLRKREVQRWSSRQQD
VAWLMVCWLALILLFFSIPVSKPLGYIMPVLPAMAVLTAMGMRQAWQHRFPKRLWVTFLA
AAVTCVIAMGMVIQHAQKTASFLLATKVQPLVSKQDQLILLNKYQFDLMFYLRLSHPAWM
VADWRTAEYEVLDDSWEKELIEAKHFDPQTAVNQLLTESVLTQHVCQLGPRQAVWVAGDP
GNASHLPMLAGIAPIATVRDHYLWRFSPAQVSRFCLAQTRPRELITAQSGRNKLVR