Protein Info for GFF2800 in Xanthobacter sp. DMC5

Annotation: Putative metabolite transport protein YjhB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 419 transmembrane" amino acids 32 to 53 (22 residues), see Phobius details amino acids 65 to 85 (21 residues), see Phobius details amino acids 95 to 114 (20 residues), see Phobius details amino acids 120 to 140 (21 residues), see Phobius details amino acids 152 to 173 (22 residues), see Phobius details amino acids 179 to 197 (19 residues), see Phobius details amino acids 231 to 252 (22 residues), see Phobius details amino acids 273 to 294 (22 residues), see Phobius details amino acids 301 to 320 (20 residues), see Phobius details amino acids 326 to 351 (26 residues), see Phobius details amino acids 363 to 384 (22 residues), see Phobius details amino acids 390 to 410 (21 residues), see Phobius details PF07690: MFS_1" amino acids 38 to 255 (218 residues), 128.5 bits, see alignment E=3e-41 amino acids 276 to 414 (139 residues), 39.1 bits, see alignment E=4.7e-14 PF00083: Sugar_tr" amino acids 60 to 212 (153 residues), 81.2 bits, see alignment E=7.6e-27 amino acids 332 to 418 (87 residues), 33.6 bits, see alignment E=2.1e-12

Best Hits

KEGG orthology group: None (inferred from 46% identity to aba:Acid345_2632)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (419 amino acids)

>GFF2800 Putative metabolite transport protein YjhB (Xanthobacter sp. DMC5)
MSLDVSGSRPAAAGTRWYVGATKAQWQSFWSAYLGWALDIMDLLLFAMLISHISADLGME
RSTAGMIASASLVATAFGGLVFGFLADRIGRTRSMVLSILCYSVGTLLCGFSQSIAQLLL
FRMVVGLGVGGEWSAGAALITETWPAQHRGKVMAWVQSAFASGYALAAIVAAVLLPTIGW
RGVFFFGIAPALLAFWIRRHTPEPEIWKQQTRRLTFVETVKMLSGEHGRSTLVCFAFTAA
AMCGYWGLFTWIPTWLATPVANGGPGLDLVKSTTWIVVMQVGAALGFISFGYVADSLGRK
VAFIVYFVLSAIAVPAYTMISSPTVLLAFGPVVAFFGTGFYSGFAPTFAELFPTNVRATA
QGFIYNAGRAVSALAPMMVGFLSAGYGLSGALAFTAGFFLLAGLIVLIFLPETKGATLQ