Protein Info for GFF280 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 242 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 22 to 22 (1 residues), see Phobius details amino acids 44 to 66 (23 residues), see Phobius details

Best Hits

Predicted SEED Role

"Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH" in subsystem Biogenesis of c-type cytochromes or Copper homeostasis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (242 amino acids)

>GFF280 Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
VLLWVLPLAAIVAGGWIIVARTRRRVRLRREPLPADTPVCGARAGWGVYVPGAVIALAVG
AGSYALTGSYPQVRAWQQATAQTPGLLARALDPQAQPLNEEEMARLALGLRTRLQNDAGN
VEGWLMLGRTGMVLGNAGTATGAYANAYRLDPKNRDAALGYAEALTRSSDPEDNRRGGEL
LRQLVSRDHTDIRVLSLYAFNAFEQQRFGEAVAAWEMMLKLLPAGDARRAVIERSIRLAQ
EK