Protein Info for GFF2783 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 328 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF09084: NMT1" amino acids 41 to 247 (207 residues), 117.4 bits, see alignment E=2.2e-37 PF13379: NMT1_2" amino acids 43 to 251 (209 residues), 73.4 bits, see alignment E=6.9e-24 PF04069: OpuAC" amino acids 49 to 233 (185 residues), 40.4 bits, see alignment E=6.7e-14 PF16868: NMT1_3" amino acids 74 to 181 (108 residues), 32.9 bits, see alignment E=1.4e-11

Best Hits

KEGG orthology group: K02051, sulfonate/nitrate/taurine transport system substrate-binding protein (inferred from 69% identity to rpb:RPB_1483)

Predicted SEED Role

"ABC transporter substrate-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (328 amino acids)

>GFF2783 hypothetical protein (Xanthobacter sp. DMC5)
MQHFKLCSVIAAAIFLAPVSSLGAAELLKARLAQNLAPISALTIVAKAQGLFEKEGLDIS
VSNFTSGKQALDTVIGGGADIATTAEAPVTAAAMAGQPIAFVTGMEYSDIKTLTAKKAAI
KSFADLKGKKIAYTAGTGSEVYTTELLKKAGLTSKDVTLVNLKPQEMLPALAAGSIDAYD
TWEPHIANGRKALGDDVALLDTKGVYSETFNIVVMQDYLKANPQIVSKFLAALIAAEAWV
KAHPEEAIEVVSKAVGMKPEDLKPIWSDYVYQVGIGAKQIDALKAHAQWRLDTKNHPPGV
TGVPDFAVVLFPEPLRALDAARVTYKLN