Protein Info for PS417_01395 in Pseudomonas simiae WCS417

Annotation: biofilm formation protein PelB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1199 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details PF13429: TPR_15" amino acids 450 to 715 (266 residues), 195.8 bits, see alignment E=1.6e-61 PF24604: B-barrel_PelB_C" amino acids 868 to 1195 (328 residues), 336.8 bits, see alignment E=2.3e-104

Best Hits

KEGG orthology group: None (inferred from 57% identity to pfl:PFL_2973)

Predicted SEED Role

"Extracellular Matrix protein PelB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UEH2 at UniProt or InterPro

Protein Sequence (1199 amino acids)

>PS417_01395 biofilm formation protein PelB (Pseudomonas simiae WCS417)
MVNSSATKSSRLLNPWALAVVAVAVGGLLWATFQREEVFQPDGREPDAVSANYAELLLTA
HPDDDHLRLQLVDLLIRLGDYTKARQHVDAWPKPQPEIQAYYRLELDALIAADGNDLIVQ
QALVERLQSFDHRKLPVAQLQSLAKLALTLQAPGFAATVFEEIAGRDPAQRTDALKSAAQ
WYLAGEQPARAADIYLQLKRDAQQPGERREYAQLAFNSLLSAGRDEQAAQVLADELPQLK
NPQTDVAWLEQGVDVAVATKQFELAQRVLQQWHDLEPDNRKILVKEFHVRLSINDLAGAW
ETGQELVIDYPDDSELLEQMAKLGEWRGDNEAALDYWIHLLKLKEDPKIREHAWRLASLQ
FDFARSIPLLAEIMQQRPLTDIELDALIYGHESRGTPAEAESWLRTYLRKYPAHRLAWTR
LLQNLENTGQFAAKGKLYKDYAKRYKLTTAELVDWASTEMKLFDEQAAWEVVKSDDASID
DPEYWHTRAALAWGLERDEDLRVSLEKLLSLKGKLTSGDESQLITLYRTSDPQRALKLMV
DSWHRAQDPQRLVEALQLAQELQEWDQVVALLEDAKKYPEAYEQAQVLAVRGALAAEQGD
ATEAERLYLLGLSRYPDDNLFRERLTWLYVDQADTAKLKPLLTKWRANARHDRLLWLPFA
SASQLLGRDAEALAWYRLYLKLSPNDWLVQAAYADALETSGYQDAAQRLRLKLLRSPEAE
NLQPSSQRYAIWLRLMSSSYSPQKAQQALLKWKDGSPSMKQLWFERLLARLDATNQQAQK
DDWLAWARTQGLKVDRYEQIQEALRSRNKAQVETLLASSDLNPAQRAQALSRLGRTNEAL
ETSLSALGDDQPDSVNEQLRRQAVEIHEATPQGALLSYQKQDFGGLSFDSPRLEIAHNLG
DNWYADVEMEHGNYKGDDVISSRLGDESNAALTLVRSVENGSWKLFADTSQRKDDDRNGL
GLSRMWQLGDSHQIETGLDWHRKSDDSGLMRAFGQQDRAWVGGRHGLTARDQLSWEVAQR
SFSTRTDKSLGNGHALKLELNHTLEFAGPNWTVRSGVDYQKNNVKDRNLDYLSSDFNGPI
RVPDVAPPEPGDPIELQTIASGDLLQSRYGQLYVGTSWRRGIPGALVRSKPQYTWLVDMT
AGWQWTDQTFNYGINTGIGFEVLGDDELALTFGYQSAPQGGDGKSGGTLGMSYGVRFGR