Protein Info for GFF2739 in Variovorax sp. SCN45

Annotation: Putative SAM-dependent methyltransferase Bucepa02006346

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 189 PF13489: Methyltransf_23" amino acids 14 to 121 (108 residues), 33.5 bits, see alignment E=8.4e-12 PF07021: MetW" amino acids 22 to 98 (77 residues), 25.3 bits, see alignment E=2.7e-09 PF05724: TPMT" amino acids 25 to 64 (40 residues), 27.2 bits, see alignment 7.6e-10 PF13649: Methyltransf_25" amino acids 30 to 112 (83 residues), 44.9 bits, see alignment E=3.9e-15 PF08241: Methyltransf_11" amino acids 31 to 97 (67 residues), 38.4 bits, see alignment E=4e-13

Best Hits

KEGG orthology group: None (inferred from 80% identity to vap:Vapar_3431)

Predicted SEED Role

"Putative SAM-dependent methyltransferase Bucepa02006346"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (189 amino acids)

>GFF2739 Putative SAM-dependent methyltransferase Bucepa02006346 (Variovorax sp. SCN45)
MKDAATAHGSGAPSEWIVRWSHLLAPDASVLDVACGSGRHMRWFAGRGHTVTGVDRSPEA
VAAASAFGRVVEADIESGPWPFAGQVFGGVVVTHYLWRPRMADIVAAVAPGGVLLYETFA
SGNETVGKPSRPDFLLQPGELLAACAGLRVVAYEDGFEADPARFVQRIAAVREAGNAPGQ
PPRRLLKGN