Protein Info for GFF2731 in Pseudomonas sp. DMC3

Annotation: Gamma-glutamylputrescine oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 433 PF01266: DAO" amino acids 33 to 387 (355 residues), 238 bits, see alignment E=2.3e-74 PF13450: NAD_binding_8" amino acids 36 to 73 (38 residues), 22.4 bits, see alignment 1.2e-08

Best Hits

KEGG orthology group: None (inferred from 89% identity to pfo:Pfl01_2830)

Predicted SEED Role

"Gamma-glutamyl-putrescine oxidase (EC1.4.3.-)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (433 amino acids)

>GFF2731 Gamma-glutamylputrescine oxidoreductase (Pseudomonas sp. DMC3)
MNQHSAQHTGSYYAASARASTPYPALDGDLLADVCVIGGGFTGVNTAIELAQRGLSVVLL
EARRIGWGASGRNGGQLIRGIGHEVEGFARYLGQDGVRYLQRAGIDSVELVRQRITENAI
DCDLRWGFCELANTAAQFAAFKQEQDSLAELDYAHETRLVGPEQIRQQVVDAGVYAGGLI
DMGSGHLHPLDLVQGEARLAAALGVRIFEQSPVLEILHGPTVEVRCAMGSVRAGSLVLGC
NAHLDDLEPKLSGKVLPAGSYIIATEPLDESRAAQLIPQNLALCDQKVGLDYYRLSADRR
LLFGGACHYSGRDPADIAAYMRPKMLKVFPQLADVHIDYQWGGKIGITANRFPQVGRLKQ
HPNVFYAQGYSGHGLNVTHWCAKLLGEAIHAGHSQGMDVFSGVPHMTFPGGPALRSPLLA
LGMFWYRLREMLG