Protein Info for PS417_13905 in Pseudomonas simiae WCS417

Annotation: chemotaxis protein CheY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1167 transmembrane" amino acids 20 to 43 (24 residues), see Phobius details amino acids 183 to 205 (23 residues), see Phobius details amino acids 261 to 278 (18 residues), see Phobius details PF05227: CHASE3" amino acids 46 to 178 (133 residues), 121.7 bits, see alignment E=6.5e-39 PF13185: GAF_2" amino acids 253 to 388 (136 residues), 55.9 bits, see alignment E=1.6e-18 PF01590: GAF" amino acids 257 to 387 (131 residues), 37.8 bits, see alignment E=7.9e-13 PF00512: HisKA" amino acids 494 to 561 (68 residues), 63.7 bits, see alignment 4e-21 PF02518: HATPase_c" amino acids 609 to 719 (111 residues), 106.9 bits, see alignment E=2.4e-34 PF00072: Response_reg" amino acids 777 to 883 (107 residues), 60.8 bits, see alignment E=4.2e-20 amino acids 899 to 1008 (110 residues), 53.8 bits, see alignment E=6.1e-18 amino acids 1045 to 1157 (113 residues), 93.4 bits, see alignment E=3e-30

Best Hits

KEGG orthology group: None (inferred from 96% identity to pfs:PFLU3017)

Predicted SEED Role

"Signal transduction histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TXQ3 at UniProt or InterPro

Protein Sequence (1167 amino acids)

>PS417_13905 chemotaxis protein CheY (Pseudomonas simiae WCS417)
MTPASSVDEQSFRTLLSRNVALPLGVGVLSAVFFVVLITYLLSVIQWVEHTDRVINNLNE
SSKLTVDLETGMRGFLITGDEHFLDPYEVAKPRIIADLRNLQELVADNPQQVDRLKRLEA
LQYEWNKYAQSMIDMQRESGDYRSAVKAGRGKRLTDEIRKEYDDAVAMEQQFRISRNEEV
TRTTVISVTLYLVFVLGLSGFLAYIGRKNLVSLSDSYSANLASQQKIARRLERQAWLRNG
QTELAEQVLGQLTLNMLGRNILQFFAQYMGSAVAALYVREEHGGLKRIATYGFSREQEQK
EQSIYSDEGIVGQAAQLDRLIRLDDVPVDYFKVSSGLGEGSTRSVLVMPTSDDDRVNGVV
ELGFLRPLEERDVELLELIAGNIGTSIEAARYRQRLQEVLAETQQLNEELQVQQEELKTA
NEELEEQSRILKESQAHLETQQAELEQTNEQLAEQTETLAEQRDAMDRKNVELNKAQLEL
EDRAEELERSSKYKSEFLANMSHELRTPLNSSLILAKLLAENPQENLSAEQVKFAESIYS
AGNDLLNLINDILDISKVEAGKLEVLPENASVARLVDGLRGMFEPLAADRKLGFQVDVQE
GSPTMLFTDRQRLEQILKNLLSNAIKFTEQGEVSLSVSRAPGEGIAFTVRDSGIGIAPDQ
QESIFEAFRQADGTTNRRYGGTGLGLSISRDLATLLGGYISVSSEPGKGSVFTLVVPEQY
VEREEDAAPIEQPRQVVVAPAPVPTPVKVSALPVADASQIPRFADDRDKAPFATRCILVV
EDEPNFARILFDLAHELGYNCLVAHGADEGYSLAEEYIPDAILLDMRLPDHSGLTVLQRL
KEHANTRHIPVHVISVEDRVEAAMHMGAIGYAVKPTTREELKDVFARLEAKLTQKVKRVL
LVEDDDLQRDSIARLIGDDDIEITDVGYAQAALDLLRTHIYDCMIIDLKLPDMLGNELLK
RMATEDICSFPPVIVYTGRNLTRDEEAELRKYSRSIIIKGARSPERLLDEVTLFLHKVES
QLSHDRQKMLKTARSRDKVFEGRKILLVDDDVRNIFALTSALEHKGAVVVIGRNGREAID
KLNEVEDIDLVLMDVMMPEMDGYEATALIRQDPRWKKLPIIAVTAKAMKDDQERCLAAGS
NDYLAKPIDLDRLFSLIRVWLPKMERI