Protein Info for GFF2714 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 607 signal peptide" amino acids 1 to 56 (56 residues), see Phobius details PF08479: POTRA_2" amino acids 104 to 180 (77 residues), 62.4 bits, see alignment E=4.3e-21 PF07244: POTRA" amino acids 104 to 179 (76 residues), 25.1 bits, see alignment E=3.5e-09 PF03865: ShlB" amino acids 245 to 541 (297 residues), 68.3 bits, see alignment E=1.3e-22

Best Hits

KEGG orthology group: None (inferred from 90% identity to xau:Xaut_2281)

Predicted SEED Role

"Hemolysin activation/secretion protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (607 amino acids)

>GFF2714 hypothetical protein (Xanthobacter sp. DMC5)
MSHSARRITSRAQSCPTPTDRSPFPRALLPKGALGRAQALLAAAGVSLVAGPALAQGLPF
NIGDAVRDAQQSQQAAPQPQQAAPLVLPKLAEPQLVLPDKSTLHVRHIVVTGTEGLAVSE
EKVRAVLGPYEGKKLTLAEIYAAADKVTALYREAGYLVAKVYVPQQDARKGTLSFKLVPG
RYGKVTVKNESRVKDFMLQGTLDTQKVLPGELIEQARLERAMLLISDLAGAGMPRAVIGA
GASQGTSDFLFDVPEQRMVDGFLMGDNFGTPYTGIWRASGGLNINSPLGIGDRLTAFGLV
SNSTDMLNGRVAYSLPLGYDGLRLEVAAFQTTYALGSTYADLDATGVADGISASLLYPFL
RSRADSIWGSAVYTYKNLNDETLGVSYAHRKINEGTLGLNRETSGVLPWLNMPVVTSSSV
AFTFGNVDFPDPDQALANLLGADTQGDFSKLTASFVMTVALMEKLSLSVNVRGQKSFTGN
LDSSEQFGLTGIFGVRSYYEGLSGDSGWLVTPELKYALPDLYGWHHAVSAFADVGGVALE
DGSYTITQPDYVQLGDIGIGYYGNYEYMTGRNLLLKAYLAWSVGGNEAQAGYSRGNTVGL
IQAGITF