Protein Info for GFF2706 in Variovorax sp. SCN45

Annotation: VgrG protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 906 TIGR03361: type VI secretion system Vgr family protein" amino acids 3 to 499 (497 residues), 546 bits, see alignment E=8.6e-168 TIGR01646: Rhs element Vgr protein" amino acids 8 to 502 (495 residues), 457.9 bits, see alignment E=4.9e-141 PF05954: Phage_GPD" amino acids 13 to 321 (309 residues), 343.8 bits, see alignment E=1.8e-106 PF04717: Phage_base_V" amino acids 376 to 444 (69 residues), 48.3 bits, see alignment 2.1e-16 PF13296: T6SS_Vgr" amino acids 478 to 583 (106 residues), 110 bits, see alignment E=1.3e-35 PF10106: DUF2345" amino acids 615 to 759 (145 residues), 124.3 bits, see alignment E=7.7e-40

Best Hits

KEGG orthology group: None (inferred from 66% identity to vap:Vapar_3859)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (906 amino acids)

>GFF2706 VgrG protein (Variovorax sp. SCN45)
MGEALQFRKLVGREALSRLYAFDVELLSNSNGIDPKALLGRPATVAMQTESGGTRYLSGI
ASFFGLGEEDARQSFYRMTLRPWLWLATLRSDFRIFQNKSVPDILTEVLGGYGYAMEQRL
SREYRAWDYCVQYHESDFSYVSRLCELEGIGYYFRHEEHRHVLVFADDIAASHEPLPGGG
TVRFHPSETSGMTSGSRASPGERIYEWKSGEEMRSGFHFTDDYDFLKPSADLSGQRQAPA
GHTHDYFERYEWPGGYKQHEDGEVYTRIRTEEQHSERCLASGRSNKRELAPGHVFELANH
PRQDQNRKYLLTSVEYELQENMQASEGAGEGSVQRFAFEAQPADHAWRPRRVTLKPRTRG
PQTAIVVGPKNEETWTDRHGRVKVEFHWDRLGARNENSSCWVRVSMGWAGDTFGTAALPR
VGHEVVVDFLNGDPDCPIITGRVFNAANMPAWRLPEQANLSGMRSRELNANDGPGHAGGS
RGNHLVLDDHPGKIQAQLKSDHLCSSLSLGHIGRIDGTEGRTDDRGEGAELRTDGHASVR
AAKGLLLTTEARPGAQAHITDIGETVARLTAARDLHERQSQTAQEAMAHEAGDQDAVTAA
LKAQNDAIKGGAAEHGAFAELGEPHLVLASAAGIQSTAAGATHIASITHNALSSGGHTSI
SAGRSFLVSVRDAARLFAYKAIRLTAATAGIDIVALQNSINLLAKLDIKLEAHRISITAK
EEIVLNGGGSFTKWNATGIVHGTRGIWREHARTHSYAGPMDMAKLLRMESVSHDDKYSVR
FAPLGSDAVFKHMDMTGLPYRILDEQQGTRAEGVIPEDGRLPRIEFDTPDEAVLVVGEES
WNWSEVPTVRTREDDDSDAPEATDGDGPQDEPADSEDSKYARQGGSAGAGQFLAESAVQA
YLNALA