Protein Info for GFF2699 in Xanthobacter sp. DMC5

Annotation: Tyrosine recombinase XerC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 474 PF13356: Arm-DNA-bind_3" amino acids 4 to 88 (85 residues), 58.4 bits, see alignment E=9.3e-20 PF00589: Phage_integrase" amino acids 250 to 389 (140 residues), 54.4 bits, see alignment E=2.1e-18

Best Hits

KEGG orthology group: None (inferred from 91% identity to xau:Xaut_0620)

Predicted SEED Role

"putative phage integrase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (474 amino acids)

>GFF2699 Tyrosine recombinase XerC (Xanthobacter sp. DMC5)
MAKLTKRTVDAAEAGAKDYVIWDDELPGFGLRVFTSGKRSYVLQYRSAGRSRRFTIGLHG
VWTPERARQEAKAQLGRIAQGDDPAEERLLDRKALTVKELCDHYLTDLQGGLILGKGGRP
KKHSTIASDLGRIHRHIVPLLGSRRVRDLTKVDITKAMKDIMAGKTRVTVKTKNLRGKSI
VKGGAGTATRTVGLLGGILTYAVEAGIIETNPAHGVRRPKDNVRTRRLSEAEYRVLGDLL
KVAAENESYRMSVEIIRQIALTGCRRTEMVTLRWAEADMDSSCLRLIDSKEGSSVRPIGL
PVVEYLEKRRKEAVGDYVFPGRGGENAFGSFPNHWWKIFAASSLADVTPHILRHSFASVA
NDLGFTEVTIAALVGHAKGSVTSNYIHTLDTALIMAADTISGYIQGLLDGVEFKQTAYAL
DRGSRKAALARFLHRAAGNEDVEHAKCGHHAHELAELPSALELDKGWEAFTLPA