Protein Info for PS417_13695 in Pseudomonas simiae WCS417

Annotation: porin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 440 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF03573: OprD" amino acids 32 to 438 (407 residues), 483.6 bits, see alignment E=2.6e-149

Best Hits

Swiss-Prot: 63% identical to PORD_PSEAE: Porin D (oprD) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: None (inferred from 63% identity to pag:PLES_43561)

Predicted SEED Role

"Outer membrane porin, OprD family" in subsystem Lysine degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UL57 at UniProt or InterPro

Protein Sequence (440 amino acids)

>PS417_13695 porin (Pseudomonas simiae WCS417)
MIKQSSLLALAVCAGISQMAFAESVTDQADSKGFIEGSSVTGLLRNYYMNRNREGGRADN
IDWTQGAMLNYASGFTQGTIGFGVDAYAYGGLKLDATHADAGTGNLPTDRHGDPEDAYGS
VGAAVKIKVSKTQLKFGDMQPTAPVFATGGTRLLPQTATGFDLTSSEIAGLDLEAGHFTS
TNSGMTSNHDHDIYATYANIAANSASFLGGKYTFSPSLSATVYAGELEDIWRQYYTNLNY
VIPLVHDQSLALDGNLYRTLDTGSAKAGAINNTTYSLAAAYSFLQAHTLTLSFQKVHGDT
PFDYIGTGNNGAGEGGDSVYLANSVQWGDFNGPGEQSWGIRYDLNMASYGVPGLSFMGRY
INGSDINGTHTPDHSAYAGDYGDDGAHHETDLEAKYVIQSGPAKNLSLRVRDAIVAANAD
QRDGDLNELRLIVDYPFTLL