Protein Info for GFF2673 in Variovorax sp. SCN45

Annotation: FIG00655207: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 326 transmembrane" amino acids 31 to 55 (25 residues), see Phobius details PF14399: BtrH_N" amino acids 10 to 141 (132 residues), 160.3 bits, see alignment E=3.1e-51 PF16169: DUF4872" amino acids 153 to 321 (169 residues), 175.3 bits, see alignment E=1e-55

Best Hits

KEGG orthology group: None (inferred from 94% identity to vpe:Varpa_2233)

Predicted SEED Role

"FIG00655207: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (326 amino acids)

>GFF2673 FIG00655207: hypothetical protein (Variovorax sp. SCN45)
VKFQHQQAAHCESGVISSLMRHHGAPMSESMALGLSSALSFAYLPFIKLSGLPLISYRMP
PKAIIKGLLAPMAARFRFETFRSPEAGQQRLDALLADGQLVGLQTSVYWLPYFPPNMRFH
FNAHNLLVYGKDGDDYLISDPVFEEPVRCASGDLARARFAKGVLAPKGLMYYPQAIDRKA
VDAASVVKAIRKTVRNMLAPIPIVGVRGMRTLAKRMQALSPTDPRSVDFIGHVVRMQEEI
GTGGAGFRFIYAGFLQEAAHLLDKPQLQQMSERLIAIGDGWRAFALKAARMVKGREAVDP
AALAVKLREQAQQEENFFRDLKAAVA