Protein Info for GFF2665 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Invasin-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 660 PF11924: IAT_beta" amino acids 40 to 321 (282 residues), 296.8 bits, see alignment E=9.7e-93

Best Hits

KEGG orthology group: None (inferred from 100% identity to stm:STM1669)

Predicted SEED Role

"Invasin-like protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (660 amino acids)

>GFF2665 Invasin-like protein (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
VVFSKKPITKYITWAIVTSQIPLPVIADSDNEIQSWIAGTASSISPHLQEGTLEDYAKGK
IKALPGQAANHLVNEGIKSAFPEIIFRGGVNLEDGAKYRSSEFDMFIPVQETTSSLLFGQ
LGFRDHDNSSFDGRTYVNVGMGYRQEVNGWLLGVNTFLDADIRYSHLRGGIGGEVYKDSL
AFSGNYYFPLTGWKMSAAHELHDERPAYGFDLRTKGTLPDFPWFSGELTYEQYYGDKVDL
LGNGTLSRNPRAAGAALVWNPVPLLEVRAGYRDAGNGGSQAEGGLRVNYSFGTPLHEQLD
YRNVGAPSNTTNRRAFVDRNYDIVMAYREQASKIRITAMPVSGLSGTLVTLMATVDSRYP
VEKVEWSGDAELLAGLQLQGSLGSGLILPQLPLTATDGQEYSLYLTVTDSRGTRVTSERI
PVRVTQDETSFRSWINVINDDVQVEDGNFVINTPLPAGEEGKVIEWHYVRERSEEEWASL
KPRHIKYQSDTPGLAFKALGGTERDGHWVERVLVTHIGDDARSLKLHIEASGPDDKHPVK
GTVLLQAQSDSIAQKVTSVEVLFTPGTEEANGSVTAPVVGTEMRARTLCVNNTDCTDAFN
YQWEISDEMKSWQSVPGATKATWLLPYSLNGESLQNKYIRVRIISDKGNAKGNTATSDAN