Protein Info for PS417_01355 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 438 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF03573: OprD" amino acids 28 to 436 (409 residues), 429.7 bits, see alignment E=6.1e-133

Best Hits

KEGG orthology group: None (inferred from 98% identity to pfs:PFLU0296)

Predicted SEED Role

"Outer membrane porin, OprD family" in subsystem Lysine degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U5I1 at UniProt or InterPro

Protein Sequence (438 amino acids)

>PS417_01355 membrane protein (Pseudomonas simiae WCS417)
MLKQRMSLIALGILSASTAMANDQDQSKGFIEDSHLNIAARNAYISRDYKNGKQDKAEWG
QGFIGKLESGFTQGTVGVGVDVIGQYAIRLDGGKGRAGAGGIDFFKQGNGTTNPDGSNNP
GSAPHDLAKGGAAVKFRVSNTVLKYGDQFPAVPVLQYDNSRLLSETYTGTSIVSKEIAGL
QLDAGHFTKEARKSMEGTDSGRLKSIDYIGGSYKFTESLSAALYASDMQDVLKKQYVNVN
YVLALPEKQSLTFDFNGYKTKLDRSFALENQKDADARDNKIWSLGATWAVGPHSFTVAHQ
RSTGDTGYLYGGYRNAGGIGDGGNTILLANSYWSDFNGKDERSWQLGYGIDFATFGVPGL
TYNVAYVRGTNIDDGTNRGDGTEREIWNQFKYVVQSGPAKDLSLRARASWLRVSNNADQY
NVGGNEIRLFADYPINVF