Protein Info for GFF266 in Variovorax sp. SCN45

Annotation: RND efflux system, inner membrane transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1028 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 333 to 352 (20 residues), see Phobius details amino acids 359 to 380 (22 residues), see Phobius details amino acids 386 to 409 (24 residues), see Phobius details amino acids 430 to 450 (21 residues), see Phobius details amino acids 462 to 481 (20 residues), see Phobius details amino acids 521 to 542 (22 residues), see Phobius details amino acids 843 to 862 (20 residues), see Phobius details amino acids 870 to 891 (22 residues), see Phobius details amino acids 897 to 920 (24 residues), see Phobius details amino acids 945 to 967 (23 residues), see Phobius details amino acids 974 to 998 (25 residues), see Phobius details signal peptide" amino acids 31 to 31 (1 residues), see Phobius details PF00873: ACR_tran" amino acids 4 to 999 (996 residues), 861.6 bits, see alignment E=3.9e-263

Best Hits

KEGG orthology group: None (inferred from 80% identity to cvi:CV_1626)

Predicted SEED Role

"RND multidrug efflux transporter; Acriflavin resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1028 amino acids)

>GFF266 RND efflux system, inner membrane transporter (Variovorax sp. SCN45)
MNFTDIFIRRPVLAMVVSLLIVVLGLRALAGLPVNQYPKTENGVVTITTAYYGADAATVA
GFITQPLEAAVSQAQGIDYLSSSSSLGVSTITATLRLNYDSNRALTEINTQVNSVRNQLP
PQAQQPVLTVATGQTTDAMYIGFYSDTLPNNNVTDFLVRVVQPKLNAIPGVQTAEILGAR
TFALRAWLDAQKMAAFGVTATDVSAALAANNYLAAVGQSKGQMVSVPLTAGTSLHSVDEF
KQLSIKSSNGAIVRLQDVANVTLGSENYDFNVAFNGVRSVFIGIKVAPEANILDVAKQVR
TTFPDLQSQLPSGLTGKIVYDSTDFINTSISEVIKTLVEALVIVTVVIYLFLGSFRAVVV
PVIAMPLSLIGTFFIMLVLGYSINLLTLLALVLAIGLVVDDAIIVVENVDRHMREGKSPM
QASLLAARELGGPILAMTVVLVAVYVPIGFQGGLTGSLFTEFAFTLAGSVVVSGIVALTL
SPMMCSRFFKPEQDTGKFATFIEHTFERVHRRYQLILRSVLKTWPVMIVMGVILVALLFV
MFKMSKSELAPEEDQGIVLSQVVGAPTATINQIQTYADQIFQIAHDTPEYAQLFQLTGVP
STNAGIAGVLLKPWDQRTRSAHDIQTDLQKRWNGIAGAKVVAFQFPALPGASGLPVQFVI
KTTEPFENLNTLAQQVMDKARADGKFYYIDADLKIDLPQATVVVDRDKIATLGITQQDVG
NAMGAALGGGYVNYFSIAGRSYKVIPQVQQVDRLNPSDVLNFYIKTPNGVVPASTVASLK
YSVQPETVNHFQQLNSVTIQGVPSGTQGETLEYLRGVVQQLAPSGYSVDYSGQSRQFVQE
SGNFAITFVFALIIVFLALSAQFESFRDPVVILVSVPLALFGAMIFIFWGFASMNIYTQV
GLVTLMGLISKHGILIVEVANRLQKQGLSKLDAIVEAAGTRLRPILMTTAAMVFGVLPLV
IASGAGAAGRKAMGIVIFSGLSIGTLFTLFVVPAMYLAIAARHKKEEAEEEGTATGTPAL
PGSVAPEA