Protein Info for GFF2650 in Xanthobacter sp. DMC5

Annotation: Oligo-1,6-glucosidase 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 542 transmembrane" amino acids 355 to 373 (19 residues), see Phobius details PF00128: Alpha-amylase" amino acids 32 to 466 (435 residues), 401.5 bits, see alignment E=3.2e-124

Best Hits

KEGG orthology group: None (inferred from 54% identity to met:M446_3483)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (542 amino acids)

>GFF2650 Oligo-1,6-glucosidase 1 (Xanthobacter sp. DMC5)
MRPSDRPRTSEPSAEGAQDPKWWQKAVFYEVAPTSYQDSNGDGWGDIKGLMRRLDYLQWL
GVDALWLTPIFPTPFADLGYDISDYCDIDPRFGTLADFDGLVAALHGRGMRLILDFVPNH
TAANHPWFEESRSSRTNANADWYVWADPAANGGPPNNWLSRFGHSAWTFEPLRGQYYYHA
FLESQPDLNWRTPQVREAMADVLRFWLERGVDGFRMDAAAVLIEDALLRDEPPNPSFGPD
TPPPERNLRVFTDDRPESLWCIEEMRAVLDAFPNRVLAGEVQGSSERIGRFYQGERPRLH
LPLNFTLLDVPFEALALQAAIDRALAAVPEGCWPDWVIGGHDKPRIASRIGQRQARLMAM
LLMTLPGTPFFFAGDELGLEQARIPPDRVRDPFDKLVPGFGLGRDPERAPMPWDASRHAG
FTDGEPWLPLPADADRRNVAVLSEDETSILHLYRHLIALRRREPALLQLGYQPLRAHDGV
LTYLRRDGGCELLVALNLTQERRVCSLGKEGDVLLSTDPHRGGKWTQVSSLAPFEGVVLD
IT