Protein Info for PS417_13390 in Pseudomonas simiae WCS417

Annotation: GntR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 468 PF00392: GntR" amino acids 13 to 73 (61 residues), 32.6 bits, see alignment E=5.2e-12 PF00155: Aminotran_1_2" amino acids 146 to 442 (297 residues), 54 bits, see alignment E=1.7e-18

Best Hits

KEGG orthology group: None (inferred from 83% identity to pfs:PFLU3158)

Predicted SEED Role

"FIG000557: hypothetical protein co-occurring with RecR"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U3N9 at UniProt or InterPro

Protein Sequence (468 amino acids)

>PS417_13390 GntR family transcriptional regulator (Pseudomonas simiae WCS417)
MTLRGERQADFAYQAVYRYMINLINEVSTDTRVKLPSLRQLAGRLNVSISTVQYAYSLLE
KEGRVYSVAKSGYYAWPLSANPLAGTSGDPLDRLYAAARRPGMVVLSGDEPALLASLDGT
LLRLERELVRQYPRYLQPWSQPCGVWELRAALAARYTSSPTRCWQADDVYIGPDLRGVLD
ILIEVLGLRGAPVIVESPCDWLVLRLLQDAGVRVIELPWTPDGRLDLVNLDHLLSAESVR
LVLLSSRVSLPAGVSMPPQDRLALAQLLDQYGCWLLENDTFGELGFDEPQAALRELVNPE
RLMVFSSFEKVLGSEAPYGYLLSRRMNNELQRHFLLRSFRLSPIRQRAIARLYHSGRIDQ
HLRGLRLQLRLQADEMCERLDRDLSDQMTYRAPAAGAAFWLRSIRTVDMRQVFQRLLSQQ
VVIAPGELFSVNGLHQQHLRLSHTFQGQPDLNVVLAALSEALRQAQMG