Protein Info for GFF2625 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 726 PF00149: Metallophos" amino acids 130 to 327 (198 residues), 24.5 bits, see alignment E=3.3e-09 PF13385: Laminin_G_3" amino acids 553 to 718 (166 residues), 43 bits, see alignment E=5.6e-15

Best Hits

KEGG orthology group: None (inferred from 79% identity to vpe:Varpa_4949)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (726 amino acids)

>GFF2625 hypothetical protein (Variovorax sp. SCN45)
MSVSDDSRGARTPRIFSPAESNASPQSDNDTTTPPRRQMLKLGASLLTVGGSSALLAACG
GGGTDSLVIGPMPASPPAPAPAPAPAPAAPAAETKISSFALAVMPDTQFYSRYATADNDQ
FSKRFGSTPFAAQTKWIAANAKALNIPFAIHLGDVVDQVRVPGEWVVADAAMKILEDAKL
PYSVLAGNHDVLSDIDYSIDRVGGTDADRTPANEPYIRTFGPDRAKKQATFGARDPSGFH
EYHVFEAQGQKFMVLSLSWRVSDAGIAWARQMIAKNPTLPVILVNHQLLNIGADGTSPLE
TDYGKMLWDKLIRDNDQIFMTLNGHHHGAAHLTKINNFGRKVEEMVVDYQMAYQGGNGLM
RLYEFDLTNKKIKVLSFSPWVPQKPAATLNSFDQAVLKTPNEAFAIDMDFAQRFAGFNKS
FGPGSATVDGSLIEKATAMILANYKEPATVEPRKAANPEDYPKVANTLAHWRFFGGTVNQ
PVPTESRIDDVTGKNPLYRDKLNQGAVTGAAEGDIVWSDDHHYLSAAPGSVRFLNTNKNT
PRLSYFLTDANAPINAQTLENGYTVEAFIKIDKNWTKANHEWMNIMTRDGRSGDLPGYAG
DGEAPPMLFAISSLREVQWEVVPSPAGPQAKANWSGEVIADRWIHIAIVNDPVSHDTTMY
VEGAPVLRNVTNAKGLATLSPASQWVVGGGSWNLKRGDGFFGNIGEVRVVAAALTSSQWL
TARKSS