Protein Info for GFF2625 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 36 to 56 (21 residues), see Phobius details amino acids 65 to 85 (21 residues), see Phobius details amino acids 104 to 122 (19 residues), see Phobius details amino acids 150 to 170 (21 residues), see Phobius details amino acids 201 to 223 (23 residues), see Phobius details amino acids 235 to 260 (26 residues), see Phobius details amino acids 272 to 289 (18 residues), see Phobius details PF02653: BPD_transp_2" amino acids 10 to 285 (276 residues), 135.1 bits, see alignment E=1.4e-43

Best Hits

Predicted SEED Role

"High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (300 amino acids)

>GFF2625 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) (Hydrogenophaga sp. GW460-11-11-14-LB1)
MSFSAWLELIASGLITGGIYALVALGLNLQYGLMRILNIAHGEFLMVGAFLTWMVQTSFG
LSPLWMIPVSFGLLFALGVAVHWLCFRRLTATSPNLDVFEARGLMVAFGLMFLVQNFISY
VWGGDLRGYDYLTQPLSIPLPGGNAQFAVNKLVVFALALLFSGALILLLRTTLLGKGVRA
LMQSPTGAQLMGINTKRLHPMMFGIGLGLSGVAGCLLSMAYTISPSMGEPYTVTALIVIT
LGGFGSMGGALAGGLLLGVIEALGMHFTNPSLKALLSYVVFIGVLLLRPEGLFARKSRKA