Protein Info for PS417_13260 in Pseudomonas simiae WCS417

Annotation: pyochelin synthetase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1818 PF18563: TubC_N" amino acids 5 to 53 (49 residues), 52.4 bits, see alignment (E = 2.5e-17) PF00668: Condensation" amino acids 95 to 492 (398 residues), 111.2 bits, see alignment E=2.9e-35 PF00501: AMP-binding" amino acids 534 to 877 (344 residues), 275.3 bits, see alignment E=4.2e-85 TIGR01733: amino acid adenylation domain" amino acids 549 to 948 (400 residues), 398.7 bits, see alignment E=1.4e-123 PF13489: Methyltransf_23" amino acids 1143 to 1310 (168 residues), 40.8 bits, see alignment E=1e-13 PF13847: Methyltransf_31" amino acids 1161 to 1271 (111 residues), 36.2 bits, see alignment 2.8e-12 PF13649: Methyltransf_25" amino acids 1164 to 1263 (100 residues), 32.9 bits, see alignment 4.9e-11 PF08241: Methyltransf_11" amino acids 1165 to 1267 (103 residues), 37.1 bits, see alignment 2.2e-12 PF08242: Methyltransf_12" amino acids 1165 to 1265 (101 residues), 53.3 bits, see alignment 2.2e-17 PF00550: PP-binding" amino acids 1412 to 1480 (69 residues), 27.6 bits, see alignment (E = 1.5e-09) PF00975: Thioesterase" amino acids 1520 to 1623 (104 residues), 57.2 bits, see alignment 1.5e-18

Best Hits

Predicted SEED Role

"iron aquisition yersiniabactin synthesis enzyme (Irp2)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U6I4 at UniProt or InterPro

Protein Sequence (1818 amino acids)

>PS417_13260 pyochelin synthetase (Pseudomonas simiae WCS417)
MPAAKLLSELKSLGVELWPQDGQLKFRAPQGLLDTERLAQLREHKQQILHLLETQERPLV
LADPAQRHTPFPLTDVQNAYLLGRQSSFGYGNVACHGYLELSWPSLDPQQVELAWNRLIA
RHDMLRAVIASEGSQRVLADVAHYSLTIADLRGATRAQHQHTVQQIRQAMEQKLYPTEVW
PLFELRLSRSDNGDTLHFSMDSLIADWASAQLLFNELELLLQNPQAALPALDITFRDYLL
AERSLLEGSRHQRDRDYWLTRIDALPAAPQLPTPLSGEDTREPRFQRHSARLEPQPWAAL
KSAASERSLTPSIVVLAAYAATLQRWSQQPAFSLNLTLLNRLPLHPQVDRLVGDFTSVSL
LQVNDPEGLDFTAQARQLGNQLFTDLEHRLFSGIQVMREIGRRRGREAAAMPVVFTSAIG
LGIEAPPASQRRVGHGITQTPQVTLDCQVMDDANGLHIHWDVRQGVFPDGLVDDMQQAFV
AELQLLALDPAAWEHPVQVPLPAWQQRERLAANATAAPLPTGRLHDGLLAMAWEHPHALA
VIDASGSLTYAALAERALAVASALREAGCDAQEPVAILMPKGLDQVVAAYGVLLAGAAYL
PLDSNAPAARRDRVLRSAKVRHVLGHSLAQPHTPLPETSQWHSVDRLPSAGADFELLEGS
PDHLAYVIYTSGSTGEPKGVMISHRAALNTVQDINRRFEVNADDRVLGLAQLSFDLSVYD
LFGPLAVGGTLVLPDPARGADPSHWAELVQRHQVTLWNSVPAQLHMLADYLHAEPRPLDS
LRLALLSGDWIPLNLPPQLKALLPELKLVGLGGATEASIWSNLHPIGAIDPAWRSIPYGL
PLANQGFRVLDHHWRDAPTWVPGDLYITGVGLAQGYLGDMDLSDARFFPHPLDGQRLYRT
GDRGRYLPGGELEFLGREDGQVKIRGHRVELGEVEAALLATPGVDSAVSLVSGDLLAFVT
AARAEPEPLPGASLLTAVKRYADSQVGSFDAQQVREYQADLSAAALSSMLEVLLKAGLFS
GERAEPDAGTILHALHAEPRHHWLVRRWLGALCEAGLLRYTHSHYRLAQPAPNPALAWGR
VEQAVASGLCSQALLDYQLKHVGQLPQLLKGEVNPFDLLFPQGQLDLALQLYGGDAVSRY
NNHCIAALINRLATHHQGDGPLRILEIGAGTGATSAPVIGLLDGLEVDYLFTDMTAFFLP
AAKQRFAEQAWVRYGVLDIDQDIRPQGLASNSVDIVLCAGMLNSVKDIDNALGQITELLS
PGGWLVFSEPTGEWPPILLTQGFMMTPVNGDHDQGRSGLRDADIWQARVKAFGGECLPAL
PQADHPLAALGMQVFAARFKAGVQRLSVDSLRRALAQRLPDYMLPAHLQVLDRLPLTANG
KVDRKTLAGWRPAADAQASSSQEAPSDPLTAELCRVWADALGLAQIGVEDSFYEKGADSL
ILARVAGQLREQLPQAQSLSYDTLLRQMLNEPNVAALARLLNQGKTTPARVAASGEAQRS
SRSNALVVPFGGGEAGPVRVMFHAALGTLDYFQHLGRALADQQAGPVIGFAVADTEQYLA
LEPKRLIESVAEDYAERLIADGHQRFQLIGYCLGGLLATEVARRLLERGMEVVDLSLIDS
IPMFIDTDEELAYEAIFVPNLNLDPVKTVFGAHIEDYDVYRAIDLLMARDNRRVPAGAMA
ALSGDPGLDALALAVQQQSARSQEERLAEYAHLASGQAGVPIGAELVPTLFRVCRHSMRA
ARFDPPPFLGNMTYLRCLEQQSFGITGGVGHLAAPFWEDACLGRFELIDVPGNHFSVIEP
PHVHTVTGHLLEALRKNS