Protein Info for PS417_13255 in Pseudomonas simiae WCS417

Annotation: ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 577 transmembrane" amino acids 15 to 35 (21 residues), see Phobius details amino acids 55 to 79 (25 residues), see Phobius details amino acids 132 to 151 (20 residues), see Phobius details amino acids 157 to 176 (20 residues), see Phobius details amino acids 246 to 270 (25 residues), see Phobius details amino acids 276 to 294 (19 residues), see Phobius details PF00664: ABC_membrane" amino acids 19 to 278 (260 residues), 82.6 bits, see alignment E=4e-27 PF00005: ABC_tran" amino acids 349 to 497 (149 residues), 92.7 bits, see alignment E=3.1e-30

Best Hits

KEGG orthology group: K06147, ATP-binding cassette, subfamily B, bacterial (inferred from 64% identity to rru:Rru_A2340)

Predicted SEED Role

"Inner membrane ABC-transporter YbtQ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TZB7 at UniProt or InterPro

Protein Sequence (577 amino acids)

>PS417_13255 ABC transporter (Pseudomonas simiae WCS417)
MTTALDTLKRPVNRLIRLGVAFAALGALVNLVPFIGLTELGRLLLAGSADSQTLWLWAAL
VVIALSVGWMASGVALWLTHVADHRLQSSLREAMVHKLGRVPLGWYTDTTSGAVRKVVQD
DLEDLHHLVAHHAVELTAAIVTPLAGLLWLATLNWRLALLAVLTLPIYAVAYTLMMRGFG
AKMQLLDKSMTRVSAAIVEFVHGIAVVKAFGQVGQAHRSYQQAVNQFSEQYAGWVRPLLR
LEAFSSMALSVPVILLVSLGVGSLLLAYGWITPLELFAETLVAVVIPQSLLVINQSLTAQ
RTALAAADRIEALLDVEELPTPKACVQPQGSDIRFEQVQFGYDAEHLILKGVDLHCPAGS
VTALVGASGAGKSTLAKLVPRFHDVNAGRICVGGADVREIDPRQLYRHVGFVLQDAQLVH
GTVADNLRLGRPDASDAEVVAAARSAQIHARIQALPRGYQSVIGDDAVFSGGEAQRVSIA
RTLLADTPVLILDEATSHADPESEALIQDALSALARGRTVLVIAHRLASISGVDQIVVLD
QGRVLESGCHEQLLKANGAYARMWRAGAETPALEMSL